CK932622

Overview
NameCK932622
Unique NameCK932622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932622_ssr487 microsatellite CK932622_ssr487:487..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11926 contig Csv1_Contig11926:1249..1863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932622 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.763e-24
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 3 
Query:    6 VALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEESQE 197
            VALDSDA  FGG GRVGH++DHFTSPEG+PGV ETNFNNRPNSF+VLSPPRT V YYRV+E +E
Sbjct:  700 VALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE 763
[Close]
BLAST of CK932622 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 3 
Query:    6 VALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNR 125
            VALDSDAW FGG GR GH++DHFTSPEGIPGV ETNFN R
Sbjct:  720 VALDSDAWEFGGHGRTGHDVDHFTSPEGIPGVPETNFNGR 759
The following BLAST results are available for this feature:
BLAST of CK932622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLGB_ORYSJ1.763e-2479.691,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_SOLTU1.072e-1382.501,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004531_E08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932622 ID=CK932622; Name=CK932622; organism=Citrus sinensis; type=EST; length=615bp
GAGGAGTTGCTCTGGATAGTGATGCTTGGGGATTCGGAGGAGATGGAAGA
GTAGGGCATAACATAGATCATTTCACATCTCCAGAAGGGATACCAGGAGT
TGCAGAAACAAATTTCAACAACCGTCCCAACTCATTCAGAGTACTATCGC
CACCTCGCACGAGTGTGGTTTACTATAGAGTAGAAGAAAGCCAAGAAGGG
CACAACAATAGTGAGCCAGTGAATGTTCAAGGAAAATTAGCAGCAGATGT
TCCAGCTGAGCTGGAAAGTCCTGAATCATCAGCCACCCTGGCAGCAGATG
ATGTTGATGATGTTACTGCAAGAAAGATTGAAGATCAGAAGCAAAATAGA
ATCGTGGGAGGGGAGTCCAATGTTTAATATGCAAAACTCAGCTGTTCATA
GGACAGCTCTGTTAAATAATAGGGAATTTATCACTGAATCCTCTATGGGT
TGTAAATTCTGATATCTGCATTTGAAATCATTCTCTTGTGTGTGTGTGTG
TGTACATACATATAGGGTGTAAAAGCGAATCCGGTTGTGCTTTGGACGGG
ATATTTTTGCAAGAGTCAATGGATTTTGATTGTTGAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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