CK932695

Overview
NameCK932695
Unique NameCK932695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:571..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  170 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.250e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.938e-37
Identity = 71/82 (86.59%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.548e-37
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.616e-27
Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG+KPWVSLP+GKG++L+I EE  KR
Sbjct:  174 KFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255          
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of CK932695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4_PRUAR7.732e-3887.8040S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI7.732e-3890.2440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS43_ARATH7.732e-3889.0240S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH7.732e-3889.0240S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH7.732e-3889.0240S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_ORYSJ2.250e-3787.8040S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_SOLTU2.938e-3786.5940S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_MAIZE8.548e-3785.3740S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4X_DANRE1.616e-2763.4140S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MONDO2.110e-2764.6340S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932695 ID=CK932695; Name=CK932695; organism=Citrus sinensis; type=EST; length=526bp
GGGCAAGTTTGNNNTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACA
GAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTT
GAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGCAACTCGTCT
AGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATGGGTGTCACTTC
CTAAGGGCAAGGGTATTAAGTTGTCCATCATTGAGGAAGCTAGGAAGAGA
CAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACAATGAATTTGGATACATT
TTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGCTGATTGGCACTCTCTAA
AGCTGAAGTAGGACGGATGCAAAAATGAATCTTTATTTTTATTTTATCAG
CACAATTTTGAACCTGCTTTGTCCTTTTTTATTTTAGCTACTATTTGGTG
GATGTTATTTTCAACTATTTAATCTAAGTTCATGTATCTCTTTATCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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