CK932726

Overview
NameCK932726
Unique NameCK932726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:758..1191. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_CITSI (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.989e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW
Sbjct:   20 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 136
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_EUCGG (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.539e-49
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RKGT++IASTNITEN+VKILLREGFI+N RK    +N K FLVLTLRHRRNRKGPYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   20 RKGTIQIASTNITENIVKILLREGFIKNVRK--HQENNKYFLVLTLRHRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_PANGI (30S ribosomal protein S8, chloroplastic OS=Panax ginseng GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.428e-49
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            +K  VRIASTNITENVVKILLREGFIEN RK    +NKK+FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   20 KKRVVRIASTNITENVVKILLREGFIENVRK--HQENKKDFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_VITVI (30S ribosomal protein S8, chloroplastic OS=Vitis vinifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.637e-49
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK TVRIASTNITEN+VKILLREGFIEN RK    ++ K FLVLTLRHRRNRKG YR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   20 RKVTVRIASTNITENIVKILLREGFIENVRK--HQESNKYFLVLTLRHRRNRKGTYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_HELAN (30S ribosomal protein S8, chloroplastic OS=Helianthus annuus GN=rps8 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.103e-47
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VR+ASTNI++++VKILLREGFIEN RK    +N K+FLVLTLRHRRNRK PYR +LNLKRISRPGLRIY NY+RIPRIL GMG+VILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   20 RKSVVRVASTNISQSIVKILLREGFIENVRK--HRENNKDFLVLTLRHRRNRKRPYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGVVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_SOLTU (30S ribosomal protein S8, chloroplastic OS=Solanum tuberosum GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.440e-47
Identity = 98/117 (83.76%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   20 RKRVVRIASTNITENIVQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_SOLLC (30S ribosomal protein S8, chloroplastic OS=Solanum lycopersicum GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.440e-47
Identity = 98/117 (83.76%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   20 RKRVVRIASTNITENIVQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_SOLBU (30S ribosomal protein S8, chloroplastic OS=Solanum bulbocastanum GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.881e-47
Identity = 97/117 (82.91%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VRIASTNITEN+++ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   20 RKRVVRIASTNITENIIQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_DAUCA (30S ribosomal protein S8, chloroplastic OS=Daucus carota GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.881e-47
Identity = 96/117 (82.05%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VRIASTNITEN+VKILLREGFIEN RK    + KK+FLVLTLRHRRNRK  YR  LNLKRISRPGLRIY NY+RIPRIL GMGIVI+STSRGIMTDR ARLERIGGE+LCYIW
Sbjct:   20 RKRAVRIASTNITENIVKILLREGFIENVRK--HKETKKDFLVLTLRHRRNRKRSYRNFLNLKRISRPGLRIYSNYQRIPRILGGMGIVIISTSRGIMTDREARLERIGGEVLCYIW 134
[Close]
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_ATRBE (30S ribosomal protein S8, chloroplastic OS=Atropa belladonna GN=rps8 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.209e-47
Identity = 97/117 (82.91%), Postives = 102/117 (87.18%), Query Frame = 3 
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRN+K PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   20 RKRVVRIASTNITENIVQILLREGFIENVRK--HQENNKYFLVLTLRHRRNKKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
The following BLAST results are available for this feature:
BLAST of CK932726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_CITSI2.989e-61100.0030S ribosomal protein S8, chloroplastic OS=Citrus ... [more]
RR8_EUCGG1.539e-4984.6230S ribosomal protein S8, chloroplastic OS=Eucalyp... [more]
RR8_PANGI3.428e-4985.4730S ribosomal protein S8, chloroplastic OS=Panax g... [more]
RR8_VITVI7.637e-4985.4730S ribosomal protein S8, chloroplastic OS=Vitis v... [more]
RR8_HELAN1.103e-4780.3430S ribosomal protein S8, chloroplastic OS=Heliant... [more]
RR8_SOLTU1.440e-4783.7630S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_SOLLC1.440e-4783.7630S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_SOLBU1.881e-4782.9130S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_DAUCA1.881e-4782.0530S ribosomal protein S8, chloroplastic OS=Daucus ... [more]
RR8_ATRBE3.209e-4782.9130S ribosomal protein S8, chloroplastic OS=Atropa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004530_D08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932726 ID=CK932726; Name=CK932726; organism=Citrus sinensis; type=EST; length=434bp
GGGGTAGAAAGGGAACGGTTCGAATAGCATCTACTAACATCACCGAAAAC
GTTGTTAAAATCCTTTTGCGAGAGGGTTTTATCGAAAACGCAAGGAAACT
CGTGGAAAACAAAAACAAAAAAGAGTTTTTGGTTTTAACCCTACGACATC
GAAGGAATAGGAAAGGGCCGTATAGACCCATTTTAAATTTAAAACGAATC
AGTCGACCCGGTCTACGAATCTATTTTAACTATCGACGAATTCCTAGAAT
TTTAGATGGGATGGGGATTGTAATTCTCTCTACTTCTCGGGGTATAATGA
CAGACCGAGCGGCTCGACTGGAAAGAATCGGTGGAGAAATTTTGTGTTAT
ATATGGTAATTATTCTGCTATCCGAATTGTATTTGGAGCTTACTTTTATG
TTGTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top