CK932727

Overview
NameCK932727
Unique NameCK932727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1479 contig Csv1_Contig1479:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            IR   +R+ID     +GI+P  EA+Q+AE+ ELDLV++S  ADPPV R MDY KY++E              +  D++E+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L+
Sbjct:   19 IRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLISDKADPPVCRIMDYGKYKFE--QEKKAREARKKQHTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLL 145          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            IR   +R+ID   + +GI+   EA+Q+AE+ ELDLV++S  ADPPV R MDY KY++E              +  D++E+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L+
Sbjct:   19 IRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFE--QEKKAREARKKQHTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLL 145          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_ANASP (Translation initiation factor IF-3 OS=Anabaena sp. (strain PCC 7120) GN=infC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            IR   +R+ID   + +GI+   EA+Q+AE+ ELDLV++S  ADPPV R MDY KY++E              +  D++E+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L+
Sbjct:   19 IRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFE--QEKKAREARKKQHTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLL 145          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 60/147 (40.82%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            +R+  +DL +      + IR   +R+ID+  + +GI+  +EA+++AE+ ELDLV+VS  A PPV R MDY KY++E              +  D++E+KM Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE +  N+A EL+
Sbjct:    4 KRRTTRDLPQIN----ERIRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPPVCRIMDYGKYKFEQEKKAREAKKKQ--HTADIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQHSNLAEELL 144          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_SYNY3 (Translation initiation factor IF-3 OS=Synechocystis sp. (strain PCC 6803) GN=infC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 60/147 (40.82%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            +R+ ++DL +      + IR   +R+ID+    +GI+  +EA+++A++  LDLV+VS  ADPPV R MDY KY++E              +  D++E+KM Y ID+HDY VR+  A++FLK GDKVK  VN +GRE +  ++A EL+
Sbjct:    4 KRRPQRDLPQIN----ERIRFPEIRVIDSDGAQLGIITPNEAMEIADERGLDLVLVSETADPPVCRIMDYGKYKFEQEKKAREAKKKQ--HTADVKEVKMRYKIDEHDYQVRINQAKRFLKAGDKVKATVNFRGREIQHAHLAKELL 144          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_CYAP8 (Translation initiation factor IF-3 OS=Cyanothece sp. (strain PCC 8801) GN=infC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            +R+ ++DL +      + IR   +R+ID+  + VG++   EA+ +A++ ELDLV+VS  A PPV R MDY KY++E              +  D++E+KM Y I + DY+VR+  A++FLK GDKVK  V  +GRE +  N+A EL+
Sbjct:    4 KRRPQRDLPKIN----ERIRFPEIRVIDSDGSQVGVITPKEALSLAQEKELDLVLVSETAKPPVCRIMDYGKYKFE--QEKKAREAKKKQHTADVKEVKMRYKIGESDYNVRVNQAKRFLKSGDKVKATVTFRGREIQHANLAQELL 144          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_GLOVI (Translation initiation factor IF-3 OS=Gloeobacter violaceus GN=infC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            IR   +R IDA    +GI+   +A+++AE+  LDLV+VS DA PPV R MDY KY++E              +  D++E+KM Y I +HDY VRL+   +FLKDGDKVK  +  +GRE +  N+A +L+
Sbjct:   40 IRFPKIRAIDADGTQLGIMHPRDALRIAEERNLDLVVVSEDAQPPVCRIMDYGKYKFE--QEKRAKEARKKQHTADVKEVKMRYTIGEHDYQVRLRDTIRFLKDGDKVKATIMFRGREIQHANLAKDLL 166          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 57/147 (38.78%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            +R+ ++DL +      + IR   +R+I      +GI+  +EA+ +AE+ +LDLV+VS  A PPV R MDY KY++E              +  DL+E+KM Y I++HDY VR+ +A++FLK GDKVK  +  +GRE +  N+A +L+
Sbjct:    4 KRRVKRDLPKIN----ERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAKPPVCRIMDYGKYKFEQEKRAREAKKKQ--HNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLL 144          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROMA (Translation initiation factor IF-3 OS=Prochlorococcus marinus GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            I+   +R++DA    +GI+ + EA+ +A+D ELDLV+VS  ADPPV R M+Y K+++E           S  ++ +++E+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+
Sbjct:   23 IKYPKLRVVDADGTQLGIISREEALDVAQDRELDLVLVSEKADPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQHTNLAESLL 149          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_SYNPW (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 3
Query:  333 VRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            +R++DA    +G++ + +A+++A++ ELDLV+VS  ADPPV R MDY KY++E           S  ++ +++E+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+
Sbjct:   28 LRVVDADGTQLGVIDREKALEVAQERELDLVLVSEKADPPVCRIMDYGKYKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLL 149          
The following BLAST results are available for this feature:
BLAST of CK932727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
IF3_NOSP74.207e-2645.74Translation initiation factor IF-3 OS=Nostoc punct... [more]
IF3_ANAVT2.727e-2544.96Translation initiation factor IF-3 OS=Anabaena var... [more]
IF3_ANASP2.727e-2544.96Translation initiation factor IF-3 OS=Anabaena sp.... [more]
IF3_MICAN3.562e-2540.82Translation initiation factor IF-3 OS=Microcystis ... [more]
IF3_SYNY36.075e-2540.82Translation initiation factor IF-3 OS=Synechocysti... [more]
IF3_CYAP81.496e-2339.46Translation initiation factor IF-3 OS=Cyanothece s... [more]
IF3_GLOVI2.552e-2343.41Translation initiation factor IF-3 OS=Gloeobacter ... [more]
IF3_SYNP23.334e-2338.78Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_PROMA3.334e-2342.64Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_SYNPW7.427e-2342.74Translation initiation factor IF-3 OS=Synechococcu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_D10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932727 ID=CK932727; Name=CK932727; organism=Citrus sinensis; type=EST; length=704bp
GGGGCTCTCTGGTTCGCGGAGTCCCAACTCCCGCTTCCCTTGAAAACGCC
ACTATGGCTGGTCTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTC
GCTCTCTTCAATCGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCA
ACCATTTCTTCCTCATTTCTTTCTCGCCTTCTCCCCATCACCACAACGTT
TCCATCACCGCCAGATACGGCGGCGGTGGCGGGCCCCGCTTCGCAGGCTC
CGACTACTCCCGCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAG
CCTTTGATATCGATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCT
CAGCAAAACATGGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGC
CGAGGATGCTGAACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTC
CAGTTGTCAGAGCAATGGATTACAATAAATATAGATATGAACAGCAAAAG
AAGAAGAAAGGGCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGCA
GGAACTTAAAATGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTC
TAAAAGCTGCAAGGAAGTTTCTGAAAGATGGAGACAAGGTTAAGGTCATA
GTGAACCTCAAAGGGCGGGAAAATGAATTCAGAAATATTGCTATTGAGCT
AATA
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