CK932735

Overview
NameCK932735
Unique NameCK932735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1480 contig Csv1_Contig1480:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  333 IFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 668
            +F  FF   +    A L    +LF+AG++  IGL+ T +FF +R   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   19 VFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  333 IFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 668
            +F  FF   +    A L    +LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   19 VFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  333 IFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 668
            +F  FF   +    A L    +LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   19 VFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1A_BOVIN (Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  333 IFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFL---QRIPILGWLFQQ 641
            IF   F   +   S  L    +LF+ G+SL IGL+ T  FF +R  +KGT             WP+LGM LETYGF  LF GF+P    FL     IP L  LFQ+
Sbjct:   19 IFFILFGMLLYFDSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFLGSASNIPFLSALFQR 124          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1A_HUMAN (Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  333 IFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLFQQ 641
            IF   F   +   S  L    +LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM LETYGF  LF GF+P    FL     IP LG LF++
Sbjct:   19 IFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGALFRR 124          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1A_MOUSE (Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  396 ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLFQQ 641
            +LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM+LE YGFI LF GF+P +  FL     IP L  LFQ+
Sbjct:   40 LLFLTGLSLIIGLRRTFAFFFQRHKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLFQK 124          
BLAST of CK932735 vs. ExPASy Swiss-Prot
Match: GOT1_CAEEL (Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  294 VSLVTTKFPFQVFIFLYFFQNDI*LPSAFLVSL*ILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 668
            V L T  F F +F+ +  F     L SA L    +LFI G++  IG++ T+ FF + +  KG+I            +P+ GMI E +GFIVLF GF P +   L+ IP +  +   P +R   DR
Sbjct:   14 VGLTTFGF-FFIFLGVLMF-----LDSALLAIGNLLFIVGITFIIGVQRTLVFFFEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYLPGIRQVLDR 132          
The following BLAST results are available for this feature:
BLAST of CK932735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GOT1B_MOUSE5.502e-1738.39Vesicle transport protein GOT1B OS=Mus musculus GN... [more]
GOT1B_HUMAN1.226e-1637.50Vesicle transport protein GOT1B OS=Homo sapiens GN... [more]
GOT1B_BOVIN1.226e-1637.50Vesicle transport protein GOT1B OS=Bos taurus GN=G... [more]
GOT1A_BOVIN3.691e-1341.51Vesicle transport protein GOT1A OS=Bos taurus GN=G... [more]
GOT1A_HUMAN4.820e-1341.51Vesicle transport protein GOT1A OS=Homo sapiens GN... [more]
GOT1A_MOUSE8.222e-1345.88Vesicle transport protein GOT1A OS=Mus musculus GN... [more]
GOT1_CAEEL4.512e-1135.20Probable Golgi transport protein 1 OS=Caenorhabdit... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004530_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932735 ID=CK932735; Name=CK932735; organism=Citrus sinensis; type=EST; length=780bp
GGGGGTAATTCTCATTTCTATCAGTTTCTCGGCAAACACGCAGAACTTTG
CGATCAATTGCTATTTTCATTTTTTTTTCCAGGCGCGCAATAGATCAATC
GAGCTCGTTTTTTTTTCTTTTTCACAGATTTAGCAAAGCGAAGGTGACGA
GTTCTTGAATCGGCGACACAATGGTTTCGTTTGAAATGAATGATCGTAAA
AAGATTGGGCTGGGGTTGACAGGATTTGGCATTTTTTTCACATTCTTGGG
AATCATCTTTTTCTTCGACAAGGGACTACTTGCCATGGGAAATGTGAGTC
TTGTCACTACTAAGTTCCCTTTTCAGGTTTTTATTTTTTTGTATTTTTTT
CAAAATGACATTTGACTACCATCGGCTTTCCTTGTTTCCCTTTAGATTCT
CTTCATTGCAGGGGTGTCTCTTACTATTGGTTTGAAGTCGACCATGCAAT
TCTTTATGAAACGTCAGAATTATAAGGGAACTATCTCTTTTGGTGTTGGC
TTCTTCTTTGTTGTTATCGGATGGCCAATTTTGGGAATGATTCTTGAGAC
ATATGGCTTCATTGTACTCTTCAGTGGCTTCTGGCCTACACTCTCAGTTT
TCTTGCAGAGGATACCCATTCTTGGTTGGTTGTTCCAACAGCCATTTGTC
AGATCGTTCTTTGACAGGTACCGAAGCAGACGGGTGCCGGTGTAATTCTG
CTATTAAAGGAAGTACAATGTAGCGATGAGTCCACTTGTAAAAATGCTGC
AGGATGAAAAGTAAAAGATTGAAAAAAAAA
back to top