CK932750

Overview
NameCK932750
Unique NameCK932750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5975 contig Csv1_Contig5975:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_ARATH (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.540e-59
Identity = 123/202 (60.89%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  196 LRNPNFDFSVSFTIMSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTPNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDI-------YNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            L +P+   S  FT MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+T NS  +D   + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+     I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSPKWVPQLAD
Sbjct:   23 LHHPSIPVSHFFT-MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDKSFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTSHISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLAD 222          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_BOVIN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.558e-19
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R ++   +   P+ VKIVEVGPRDGLQNEKN VPT VK++LI  L  +GLPVVEATSFVSPKWVPQ+AD
Sbjct:   18 LRAVSTSSVGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQMAD 87          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_RAT (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.010e-18
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R  +   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK++LI  L  +GLPV+EATSFVSPKWVPQ+AD
Sbjct:   18 LRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQMAD 87          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_MOUSE (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R ++   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP WVPQ+AD
Sbjct:   18 LRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFVSPNWVPQMAD 87          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGC2_HUMAN (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens GN=HMGCLL1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  595 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            L G+P FVKIVEVGPRDGLQNEK  VPT +K+E I RL  +GL V+E TSFVS +WVPQ+AD
Sbjct:   71 LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMAD 132          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_MACFA (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+EATSFVSPKWVPQ+AD
Sbjct:   18 LRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFVSPKWVPQMAD 87          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGC2_MOUSE (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Mus musculus GN=Hmgcll1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  595 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            L G+P +VKIVEVGPRDGLQNEK  VPT +K+ELI +L  +GL V+E TSFVS +WVPQ+AD
Sbjct:   41 LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQMAD 102          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_CHICK (Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus GN=HMGCL PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  607 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD
Sbjct:    3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMAD 60          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_PONAB (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D
Sbjct:   18 LRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGD 87          
BLAST of CK932750 vs. ExPASy Swiss-Prot
Match: HMGCL_HUMAN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  571 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 780
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D
Sbjct:   18 LRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGD 87          
The following BLAST results are available for this feature:
BLAST of CK932750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HMGCL_ARATH1.540e-5960.89Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_BOVIN1.558e-1967.14Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_RAT1.010e-1864.29Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_MOUSE1.722e-1862.86Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGC2_HUMAN2.249e-1869.35Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyas... [more]
HMGCL_MACFA5.011e-1862.86Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGC2_MOUSE6.545e-1867.74Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyas... [more]
HMGCL_CHICK8.548e-1872.41Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus G... [more]
HMGCL_PONAB5.541e-1760.00Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_HUMAN5.541e-1760.00Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_A10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932750 ID=CK932750; Name=CK932750; organism=Citrus sinensis; type=EST; length=781bp
CGCGCCGGGGAAAAANNNAAATANNNNAATAAAAATACAAAAACGCCTCC
TTGTAACTGTAACCTACAAGAAGAGTCCACACCAACGAATCCCACTCCTT
CACGTTTCCTCTTCTTCTCCTCCTTCCATCTATCTAATCGGCCAATTTTT
TTTGTTTTGTTTTTTCAAATTCTAAAGTTTCTTCCTTTTTCTATTCTCAG
AAACCCTAATTTTGACTTCAGTGTATCTTTCACCATCATGTCAAGCTTGG
AGGAGCCACTTGGTCTTGACAAGCTGCCAAGCATGAGCACCATTGATAGG
ATTCAGAGGTTCTCCTCCAATGCTTGCAGGCCTAGTGGGGATGGTATGGG
AATGGGGAGCTGCTGGATTGAGGGGAGCAGTTGCAGCACCCCCAACAGTT
ATGATGAAGATTATGATGAATATACAAGAGAGGCATTCCCATGGAGAAGA
CATACAAGGGACATGTCTCATGGTGACTCCTTCAGTCGTAGAACTGTAAG
CTTAGGAAGAAATCACAAGATGTTTGGAAGTGCTTGTGACATATATAATT
CCAATTGCAATGACAAAGACATACGAGATATAACAAATAAGTTTTTGAAA
GGTATACCAAGGTTTGTGAAGATAGTAGAAGTTGGTCCGAGAGATGGATT
GCAAAATGAGAAGAATACTGTACCCACGGGTGTAAAGGTGGAACTGATTC
GCAGATTAGTGTCCTCTGGGTTACCTGTTGTTGAGGCTACAAGTTTTGTC
TCTCCAAAATGGGTTCCTCAGCTAGCAGATG
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