CK932757

Overview
NameCK932757
Unique NameCK932757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1457 contig Csv1_Contig1457:1065..1671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK932757 vs. ExPASy Swiss-Prot
Match: NUP53_DANRE (Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 1 
Query:   34 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPY---YLQNGNTSTGQSGGAIASPAKSMVSKIMDLMFG 444
            FPPA  + +L +F + G ILKHV      NWMH+ YQ++  A+KALSK+G      +++GVKP +D    ++L++   S    T P   P + +  L++ R+  RP    Y  + +     S        +S VSK M+ MFG
Sbjct:  166 FPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307
The following BLAST results are available for this feature:
BLAST of CK932757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUP53_DANRE6.901e-1334.27Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004529_H09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932757 ID=CK932757; Name=CK932757; organism=Citrus sinensis; type=EST; length=607bp
GGGCACCCCTTCCTGCATATACGGTGATCTCTATTTCCTCCAGCTGATAC
CAATTTGGTTTTGCGAGAATTTGAAAAGTGTGGTGTGATCTTGAAACATG
TTCCTGGTCCAAGAGATGCTAACTGGATGCACATTCTATATCAGAATCGT
TCTGATGCTCAAAAGGCTCTCAGCAAGAATGGGATGCAAATCAATGGGGT
CCTAATTGTTGGTGTGAAACCATTGGATCCAATGCAACGCCAAGCTTTGA
ATGAAAGAATTAACAGTCAAGGATTTATGACTCTGCCCCCTCCGTCCAGC
AGAACCTCGGAGCTGAACTCATTTAGAGCATCCTCGCGCCCATATTATCT
TCAAAATGGAAATACAAGCACAGGACAGTCAGGAGGTGCCATTGCTTCCC
CAGCCAAGTCTATGGTTTCCAAAATCATGGATTTGATGTTTGGCATTTAG
GATACAGTCACCCACTAGATTTCTATTTTCTTGTTATAATCAAATGTATG
AAGCAATTCAAATATATAATTGAGAGTATCTGGCTATCTGCAAATGTCCT
TTGTAGCTCAAATCGGCAATTTTCCCTGGTTTGGGAATAATATAGCTCTA
ATTGTCA
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