CK932759

Overview
NameCK932759
Unique NameCK932759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2997 contig Csv1_Contig2997:78..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932759 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 5.325e-67
Identity = 133/216 (61.57%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   12 RVFFFALLHLASPLLQVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGXFISIESVFLVTLGIALLVLFWLWIHGQVKQLS 638
            RV F ALL LASPLLQVARCQSD+E   +  +     +VGE+  D         D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESG  +S ESVFL+TLGI LL+L  LW + QV++L+
Sbjct:    5 RVLFLALLLLASPLLQVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLT 216          
BLAST of CK932759 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  165 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGXFISIESVFLVTLGIALL 593
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFV 175          
The following BLAST results are available for this feature:
BLAST of CK932759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH5.325e-6761.57Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI3.276e-1634.27Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004529_H12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932759 ID=CK932759; Name=CK932759; organism=Citrus sinensis; type=EST; length=639bp
TGAAGACGTTTAGGGTTTTCTTCTTCGCTCTCCTCCATCTAGCCTCTCCT
CTTCTTCAAGTTGCTAGGTGTCAATCGGATTCGGAAACGGGAGTTGCAGA
GACCGAAGGGGGTGATCTTGGGATTGTTGGTGAGGATGCTCAAGATTTTG
GTGATGGGACTTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTATCTTC
CCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGAACTACT
GGTTGGGATGAAAAATGATGGGGAGTCAAGCGTGAATGTGATTGCAATTC
AGGCCAGTGTTCATCTCCCTTTTGATCACAGTCTTTTGGTTCAAAATCTC
ACTGGACAGGCCTTTAACAATGCAACTGTGCCGGTATCAGCTCAGGCTAC
CTTTCCATACATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACTTTTG
ATCTTGTGGGCTCCATTGTTTATGAGGTAGACCAGCATCCTTACCAAAGC
ACCTTCTACAATGGTACCATTGAAGTTGTTGAATCTGGTNGGTTCATCAG
CATTGAGTCCGTTTTTCTTGTTACCCTTGGAATTGCGCTTCTCGTCCTTT
TTTGGTTATGGATTCATGGTCAAGTCAAACAATTGTCCA
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