CK932773

Overview
NameCK932773
Unique NameCK932773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932773_ssr125 microsatellite CK932773_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK932773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBL1_ORYSJ3.939e-12100.00Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_WHEAT3.939e-12100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR3.939e-12100.00Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN3.939e-12100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.939e-12100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.939e-12100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.939e-12100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.939e-12100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.939e-12100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.939e-12100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_H05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932773 ID=CK932773; Name=CK932773; organism=Citrus sinensis; type=EST; length=397bp
GGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGAT
TACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCCGTGG
AGGTTTCCGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGG
TTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAATAACT
ATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCTGTTTCTAAGATAT
TGATATGGTCCCACTAACGTCCCATTATAATATCTAAGAATCTTTTTCTT
GAATAAATACATGTTTAATGTGNNNAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAAAAAAAAAAACCCAAAAAAAAAAAAAA
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