CK932815

Overview
NameCK932815
Unique NameCK932815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1604 contig Csv1_Contig1604:109..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932815 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 1
Query:  277 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPC 594
            Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGIDFTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC
Sbjct:   76 YSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPC 178          
BLAST of CK932815 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 1
Query:  277 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPC 594
            Y   PSQS         +K +R+YSKI DNY SL QV++AL RAGLESSNLIVGIDFTKSNEWTGA+SF R+SLHH+ +  NPYEQAI+IIG+TL++FDEDNLIPC
Sbjct:  111 YPPPPSQSQVA----DRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPC 212          
BLAST of CK932815 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  364 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIP 591
            ++ +L+ +  A+  AGLE SNLI GID+TKSN + G R+F +R LH I   + NPY+Q I I+GKTLSSFD D  IP
Sbjct: 7298 HFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIP 7374          
The following BLAST results are available for this feature:
BLAST of CK932815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.406e-3975.47E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.046e-3467.92E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL8.326e-1653.25Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004529_B06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932815 ID=CK932815; Name=CK932815; organism=Citrus sinensis; type=EST; length=594bp
CGGCCGGGGGATCCGCCATCNNNNNTCTGAACTGACGACACCAACTTCAC
CGCCATCTTCTTCTTAAGCCAAGCATAAGAATTGAAGATGTTGCTGAAAC
TGAACAGTTTTTACTAAGAATATCTGTTGGTTATAGAGTTGATGGGTGGG
ATAATTTCAAAACGGGAAAGTTCTCGGCAGCCTTCATTTGGGTCTAGTTC
ATATTCATGGAATCATCACAATTATCCGCAGCAGCCACCATATGGTCAAC
CAAGTCAAGAGTATGCCCCACAACAGTATTATGCCACTCCATCTCAAAGC
TACAGTGGTCGGGCCCCAGAGTCGACGAGGAAGTTGGAGAGGAAGTACTC
CAAGATAGATGATAACTATCATAGCCTGGAGCAGGTTACAGATGCTTTGG
CACGTGCTGGGCTAGAGTCATCAAATCTCATTGTTGGTATTGATTTCACA
AAGAGCAATGAGTGGACAGGTGCAAGATCATTTCAGCGGAGAAGTCTACA
TCACATTGGTGATGATCAGAATCCCTACGAACAAGCAATATCAATTATTG
GAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCATGT
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