CK932825

Overview
NameCK932825
Unique NameCK932825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:152..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.471e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNV+KKDP
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.188e-25
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+KNV+KKDP
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.388e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.388e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  378 EPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.388e-25
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  378 EPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.567e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            EPKF KNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  378 EPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
The following BLAST results are available for this feature:
BLAST of CK932825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.109e-2596.49Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC2.471e-2594.74Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOYBN4.214e-2594.74Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_SOLLC7.188e-2591.23Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_VICFA9.388e-2592.98Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA9.388e-2592.98Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_MAIZE9.388e-2592.98Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_ARATH3.567e-2491.23Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_MANES4.659e-2492.98Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA1.038e-2391.23Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932825 ID=CK932825; Name=CK932825; organism=Citrus sinensis; type=EST; length=465bp
GGGGAGCCCAAGTTCTTTAAGAATGGAGATGCTGGAATGGTTAAGATGAT
TCCCACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTG
GTCGTTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATT
AAGAATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGC
AGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCT
TTTATTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACG
GGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCAGAGTTTTTTTTT
GGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCAAGATT
AGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAA
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