CK932873

Overview
NameCK932873
Unique NameCK932873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 3.114e-105
Identity = 181/217 (83.41%), Postives = 194/217 (89.40%), Query Frame = 1
Query:  118 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVGS 768
            MATFGA A A N NPNKS EV+  P+DS+SSL FSP+A+ILVATSWDNQVRCWEISRSG  +AS PKASISHD PVLCS WKDDGTTVFSGG DKQ KMWPLLSGGQPVTVAMH+ PI  +AWIP MNLLATGSWDKTLKYWDTRQ NPVHTQQLPD+CY L+V++PLMVVGTADRNL+VFNLQNPQTEFKRI SPLKYQTRCV AFPDQQGFLVGS
Sbjct:    1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGS 216          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_XENTR (mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.674e-58
Identity = 116/223 (52.02%), Postives = 146/223 (65.47%), Query Frame = 1
Query:  127 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            FG+ A   N NP K IEV+ PP DS+S L FSP     N L+A SW N VRCWE+  +G    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAPIK V W+  P  + + TGSWDK+LK+WDTR PNP+ T QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI+SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   18 FGSTAT-DNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTVHWVKAPNYSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.567e-56
Identity = 111/220 (50.45%), Postives = 139/220 (63.18%), Query Frame = 1
Query:  136 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.567e-56
Identity = 111/220 (50.45%), Postives = 139/220 (63.18%), Query Frame = 1
Query:  136 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.777e-56
Identity = 111/215 (51.63%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  151 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K V WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 110/215 (51.16%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  151 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 110/215 (51.16%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  151 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 110/215 (51.16%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  151 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.327e-55
Identity = 107/215 (49.77%), Postives = 139/215 (64.65%), Query Frame = 1
Query:  151 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            + NP K +EV+ PP DS+S L FSP     N L+  SW N VRCWE+  +G    +VPKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A H+ PI+ + WI  P  + + TGSWDKTLK+WDTR PNP+ + Q+P+RCY   V YP+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   25 SHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQ---TVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGS 235          
BLAST of CK932873 vs. ExPASy Swiss-Prot
Match: RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 110/220 (50.00%), Postives = 137/220 (62.27%), Query Frame = 1
Query:  136 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGRDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFLVGS 768
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+   DK  KMW L S  Q + +A HDAP+K + WI  P  + + TGSWDKTLK+WDTR  NP+   QLP+R Y   V YP+ VV TA R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GS
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGRGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235          
The following BLAST results are available for this feature:
BLAST of CK932873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RAE1L_ARATH3.114e-10583.41Rae1-like protein At1g80670 OS=Arabidopsis thalian... [more]
RAE1L_XENTR1.674e-5852.02mRNA export factor OS=Xenopus tropicalis GN=rae1 P... [more]
RAEL1_PONAB1.567e-5650.45mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV... [more]
RAE1L_HUMAN1.567e-5650.45mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
RAE1L_BOVIN7.777e-5651.63mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1[more]
RAEL1_PIG1.016e-5551.16mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1[more]
RAE1L_RAT1.016e-5551.16mRNA export factor OS=Rattus norvegicus GN=Rae1 PE... [more]
RAE1L_MOUSE1.016e-5551.16mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV... [more]
RAE1L_DANRE1.327e-5549.77mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=... [more]
RAE1L_MACFA6.584e-5550.00mRNA export factor OS=Macaca fascicularis GN=RAE1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932873 ID=CK932873; Name=CK932873; organism=Citrus sinensis; type=EST; length=769bp
GCGGGGATCACCNNNTCAACTAAGAACCTGNNNNNNTGTCACTCACTAAC
AAAATATCACGAAACGATCAATAATTAGCAAGTTATTAGCAAATTAACTG
AACTGCTTCAAGCAATAATGGCTACTTTCGGTGCTGCTGCCGTTGCCACC
AATCAAAACCCTAATAAGTCCATCGAGGTGTCTCAACCTCCCAGTGATTC
TGTTTCAAGCCTTTGTTTCAGTCCCAAGGCCAATATCTTGGTTGCAACCT
CATGGGATAATCAGGTAAGGTGTTGGGAAATTTCACGCAGTGGAACTGGT
GTGGCCAGTGTGCCCAAGGCATCAATTTCACATGACCATCCGGTCCTATG
CTCAACATGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGACGTGACA
AGCAGGTTAAGATGTGGCCTTTACTCTCTGGTGGTCAGCCAGTGACTGTG
GCTATGCATGATGCGCCAATTAAGGAGGTTGCTTGGATTCCAGAGATGAA
TCTGCTTGCTACAGGAAGCTGGGACAAGACATTGAAGTACTGGGATACAA
GGCAGCCAAATCCTGTGCACACTCAACAGCTGCCTGATCGCTGCTATGCA
CTTACGGTGAGATATCCACTTATGGTTGTTGGCACTGCAGATAGAAATCT
AGTTGTCTTCAACTTGCAGAATCCTCAGACTGAGTTCAAGAGAATCAATT
CCCCTTTGAAGTACCAGACGAGATGTGTTGCTGCCTTTCCTGACCAGCAA
GGTTTCTTGGTTGGTTCGA
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