CK932941

Overview
NameCK932941
Unique NameCK932941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:44..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.622e-68
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLL+++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDL 137          

HSP 2 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query:  400 LSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 510
            LSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:  124 LSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.518e-66
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL ++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.285e-65
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL ++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.285e-65
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLLA +K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.285e-65
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLLA +K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.421e-64
Identity = 118/136 (86.76%), Postives = 125/136 (91.91%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LLA++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.856e-64
Identity = 118/136 (86.76%), Postives = 124/136 (91.18%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LLA++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.166e-64
Identity = 118/136 (86.76%), Postives = 123/136 (90.44%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEH FESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTDENLL+ +K G  + K L
Sbjct:    2 SDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.135e-64
Identity = 118/136 (86.76%), Postives = 123/136 (90.44%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFN KKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL ++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDL 137          
BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.400e-64
Identity = 118/136 (86.76%), Postives = 124/136 (91.18%), Query Frame = 2
Query:   35 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLKMGLLKEKTL 442
            SDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL ++K G  + K L
Sbjct:    2 SDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDL 137          
The following BLAST results are available for this feature:
BLAST of CK932941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
IF5A_MANES1.622e-6891.18Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_SOLLC1.518e-6689.71Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A3_SOLTU1.285e-6588.24Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_TOBAC1.285e-6588.24Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.285e-6588.24Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A5_SOLTU1.421e-6486.76Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC1.856e-6486.76Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A3_SOLLC3.166e-6486.76Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLLC4.135e-6486.76Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU5.400e-6486.76Eukaryotic translation initiation factor 5A-1/2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932941 ID=CK932941; Name=CK932941; organism=Citrus sinensis; type=EST; length=633bp
GGGGGAGGACAAGACCTTTNNAGAAAAAACTNNNTCGGACGAGGAGCACC
ACTTCGAATCGAAGGCTGATGCCGGTGCATCGAAGACTTTCCCTCAGCAA
GCTGGAACCATCCGCAAGAATGGTTATATTGTCATCAAAAATCGTCCTTG
CAAGGTTGTTGAAGTTTCCACTTCAAAGACTGGCAAGCATGGACATGCCA
AGTGCCACTTTGTGGGAATTGATATATTTAATGGAAAGAAGCTTGAAGAT
ATTGTGCCTTCCTCCCACAATTGTGATGCTCCCCATGTTACTCGCACTGA
CTATCAGCTGATTGATATATCCGAAGATGGTTTTGTGAGCCTTTTAACTG
AAACCGGAAACACCAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTC
TTAGCCAGATTAAAGATGGGTTTGCTGAAGGAAAAGACCTTGTGGTGACC
GTTATGTCGTCAATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGG
TCCTAAGAATTAACTATAATCCCATGGCATTAGCTTTGGCTGATAGCAGG
AGAACTCTTTCTTATGTTGCCAACATGGAGACTATCTACTATCCATGTCC
ACAACAAACTTCCATTAAGATAGTATTTTGGGC
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