CK932952

Overview
NameCK932952
Unique NameCK932952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932952_ssr544 microsatellite CK932952_ssr544:544..555. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1759 contig Csv1_Contig1759:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932952 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  118 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 384
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of CK932952 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  118 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 384
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of CK932952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA6.558e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.237e-1146.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004349_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932952 ID=CK932952; Name=CK932952; organism=Citrus sinensis; type=EST; length=795bp
GCGGGGGCACAAACGAAATTACTAGTCCTNNNCCACCCGCATTTTTAGAT
CCAATCTTTCGTTATCTTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAA
ACCCAATTCGATTCAAAATGGCCACTGAAGATCCCGTTGTGGACACGGAG
ACCCTTCCTCAACCGGAATCCGCTGAACCGGTGGTAGAGGACAAACCGTC
CTCCAAAGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAG
CCGCTGCTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCTCCGTATGAA
GAGATGATTAAGGATGCAATTGTTACTTTGAAAGAGAAGACCGGTTCGAG
TCAGTATGCAATTGCCAAATTTATTGAGGAGAAGCACAAGCAGTTGCCAC
CCAACTTTAAGAAGCTGTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCC
GGAAAGCTCGTGAAGGTTAAGGGTTCCTTCAAGCTTCCATCGGCTAGGGC
TGCCGTTTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGA
AGAAGCCGGTTGCTGCTGGTAAGGCCAAAACTAAGGCGGCGCCCTCCAAG
GCCAAAGCTCCACCTAAGGCTAAGGCTAAGGCGCCAGCTAAAGCTCCGGC
CAAGGCTAAGCCAGCTGCTAAACCCAAAGCCAAGCCGGCTGCCAAGACTA
AGGCGGTGGCTGCCAAGACTAAAGCGGCTCCGGCTAAGGCTAAGCCTGCT
GCCAAACCGAAAGCTGCAACAACCAAGACGAAGGTGACCGCCAAG
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