CK932961

Overview
NameCK932961
Unique NameCK932961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932961_ssr252 microsatellite CK932961_ssr252:252..263. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1507 contig Csv1_Contig1507:1..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK932961 vs. ExPASy Swiss-Prot
Match: HAP28_RAT (28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:  300 QRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 521
            +RKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   73 KRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of CK932961 vs. ExPASy Swiss-Prot
Match: HAP28_MOUSE (28 kDa heat- and acid-stable phosphoprotein OS=Mus musculus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:  300 QRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 521
            +RKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   73 KRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of CK932961 vs. ExPASy Swiss-Prot
Match: HAP28_HUMAN (28 kDa heat- and acid-stable phosphoprotein OS=Homo sapiens GN=PDAP1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:  300 QRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 521
            +RKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   73 KRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
The following BLAST results are available for this feature:
BLAST of CK932961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HAP28_RAT2.847e-1150.0028 kDa heat- and acid-stable phosphoprotein OS=Rat... [more]
HAP28_MOUSE2.847e-1150.0028 kDa heat- and acid-stable phosphoprotein OS=Mus... [more]
HAP28_HUMAN2.847e-1150.0028 kDa heat- and acid-stable phosphoprotein OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004349_D04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932961 ID=CK932961; Name=CK932961; organism=Citrus sinensis; type=EST; length=814bp
GGGGAAAAAGGAGCGACCTAAGAGCAGAAGCTTAAAGCCTTAAACAACAG
GAAAAAAAAATCTGTGATAAATTTTCTTCTTCTTGTTATTATTATTGTTG
TTGTTAGTGGTAATCAGCAAAAATGGGAAGAGGAAAGTTCAAGGGCAAGC
CCACCGGTCACCGCCACTTCTCCACTCCCGAAGAAATGCTTGCTGGTACC
TCGAATCGTCGCCCCCGCACTTTTAGACAGGAAGAAGTTGGACTGAAGGA
AGAGGAGGAGGAGGAACAAGAAGAGTCGGGAGAGGAAGAGGAAGAAAATC
AGAGGAAAGGCACCCAGGGAATTATTGAGATTGAGAATCCTAATATAGAA
AAACCTAAGAATGTGAAGGCTAAAGATGTTGATATGGGGAAAACAACTGA
GCTCTCAAGGCGTGAAAGAGAGGAGATTGAGAAGCAAAAAGCTCACGAGC
GATATATGAGGCTTCAAGAACAAGGGAAAACAGAACAAGCAAGAAAGGAT
TTAGAGCGCTTGGCCCTGATACGTCAACAAAGGGCTGAAGCTGCCAAGAA
GCGAGAGGAAGAGAAGGCTGCCAGAGAGCAGAAAAAAACTGAAGCTCGGA
AGTGAAAAGAACCCAGAGGATAGTAAGTTGCATCTAATTTTCTTTATTCA
AAGGAAAGAACCCTATCGTTTGTTTACTTAAGCTTCTGAGCAACAAGAAG
AGAAAAAATAAAAAGAAGCAGAAGCTGATAAATTTCACTTCCCTTCATAA
TTATTAGAAACATATAGTTATATCATGTGTGGCATCTGAAATTTTTATCT
GAGTAAACTCTGTT
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