CK933038

Overview
NameCK933038
Unique NameCK933038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1517 contig Csv1_Contig1517:1..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_CHICK (Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.271e-51
Identity = 95/165 (57.58%), Postives = 129/165 (78.18%), Query Frame = 2
Query:  167 ERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 661
            +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct:   12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_RAT (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.398e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  167 ERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 661
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_MOUSE (Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.398e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  167 ERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 661
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_DICDI (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.090e-50
Identity = 101/174 (58.05%), Postives = 131/174 (75.29%), Query Frame = 2
Query:  143 GDAIFANVERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ-GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 661
            G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS + RC DF ETAEVIAK+GFKMFLGV A V +WDA+     + +EDNPL+DFVELPD  +  LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct:    9 GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_HUMAN (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.976e-50
Identity = 92/165 (55.76%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  167 ERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 661
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: BET3_SCHPO (Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe GN=bet3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.042e-45
Identity = 93/178 (52.25%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  143 GDAIFANVERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 673
            G+ ++  V++VNAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLAK+   RC DFRET E +AK+GFK+FL  +  +S+   DG    + L+DNPL +FVELP D  Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct:    7 GEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: BET3_YEAST (Transport protein particle 22 kDa subunit OS=Saccharomyces cerevisiae GN=BET3 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.938e-40
Identity = 84/180 (46.67%), Postives = 125/180 (69.44%), Query Frame = 2
Query:  143 GDAIFAN-VERVNAELFTLTYGAAVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 673
            G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D  + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct:   14 GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPC3L_MOUSE (Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.365e-37
Identity = 79/163 (48.47%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  170 RVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 655
            ++N +LF LTYGA V QL  D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC  + E   +IA++ FKM+LG+T +V+  ++     S+IL  NPL +FV ELP     L YCN+L G+IRGALEMV +   VT+++D L+GD   E+ +  LK++ E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPC3L_HUMAN (Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.971e-37
Identity = 79/163 (48.47%), Postives = 115/163 (70.55%), Query Frame = 2
Query:  170 RVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 655
            ++N +LF LTYGA V QL  D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC  + E  ++IA++ FKM+LG+T +V+  ++     S+ILE NPLV+FV ELP     L YCN+L G+IRGALEMV +  +VT+++D L+GD   E+ +  LK+  E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175          
BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEBR (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 2
Query:  158 ANVERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 568
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LGV+AT S+W +      I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   10 ADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMIAGAIRGALEAVHFK 149          
The following BLAST results are available for this feature:
BLAST of CK933038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CHICK1.271e-5157.58Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_RAT2.398e-5056.36Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_MOUSE2.398e-5056.36Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_DICDI4.090e-5058.05Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_HUMAN6.976e-5055.76Trafficking protein particle complex subunit 3 OS=... [more]
BET3_SCHPO1.042e-4552.25Transport protein particle subunit bet3 OS=Schizos... [more]
BET3_YEAST2.938e-4046.67Transport protein particle 22 kDa subunit OS=Sacch... [more]
TPC3L_MOUSE1.365e-3748.47Trafficking protein particle complex subunit 3-lik... [more]
TPC3L_HUMAN3.971e-3748.47Trafficking protein particle complex subunit 3-lik... [more]
TPPC3_CAEBR9.803e-2846.43Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933038 ID=CK933038; Name=CK933038; organism=Citrus sinensis; type=EST; length=816bp
GGGGCGGTCGAGTCACTGGTATTGCACTGGGACATTGAGGCGAGCTAAGG
AGGAAGAAGATAAAAAACCTATAAATTCTGGTGATCAAATTTAGTTATCG
CTTTGCAGAGATCTCATAATGGCTCCCGTTGGTCCTCGATCCGGTGACGC
AATCTTCGCCAACGTGGAACGCGTGAATGCTGAGCTGTTTACATTAACTT
ACGGCGCCGCTGTGCGTCAGCTGCTCACGGATCTGGAGGAGGTTGAGGAA
GTTAACAAACAGCTTGATCAAATGGGCTATAATATTGGGATTCGACTGAT
TGATGAGTTTCTAGCAAAATCTAATGTCACTAGGTGTGTAGACTTCAGGG
AGACTGCTGAAGTGATTGCAAAGATGGGTTTCAAAATGTTTTTAGGGGTT
ACTGCAACCGTGAGCAACTGGGATGCTGATGGGACATGTTGCAGTATAAT
TTTGGAAGATAATCCTCTGGTGGATTTTGTTGAGCTTCCTGATACTTGTC
AAGGCCTTTATTATTGCAACATCTTGAGTGGAGTCATTAGAGGGGCCCTA
GAGATGGTTTCAATGAAAACTGAAGTCACTTGGATCCGCGATGTGCTTCG
AGGGGATGATGCATATGAGCTGCAGGTGAAACTTCTGAAACAAGTCCCAG
AAGAATATCCATACAAGGATGATGAGTAATATCCTGTCTTGGTGCCTGAT
GCGGACATACCGAGTTTACATTCTTGCACTTCATTTTCCCTAAAGAATAT
CAGTTTTAACAGCTTGTTCTCTGTATAAATATTCACTTGGGAGAAACTTT
TGATAGGTTTTCCGTT
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