CK933058

Overview
NameCK933058
Unique NameCK933058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 2.861e-56
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG S
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.329e-53
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVN+PKTK TYCKNKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG S
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 2.968e-45
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KGA+
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAA 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 5.062e-45
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +GA+
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAA 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KGA+
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KGA+
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.310e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 375
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 7.310e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 375
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKG 101          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 9.547e-44
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGAS 381
            MVNVPKT+KTYCK K+C+KHT HKVTQYK GK SL +QGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KGA+
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAA 103          
BLAST of CK933058 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.127e-43
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   73 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 375
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
The following BLAST results are available for this feature:
BLAST of CK933058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI2.861e-5698.0660S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH1.329e-5393.2060S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH2.968e-4579.6160S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE5.062e-4579.6160S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_COPCI1.924e-4477.6760S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC71.924e-4477.6760S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICJA7.310e-4481.1960S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI7.310e-4481.1960S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_CANGY9.547e-4478.6460S ribosomal protein L44 OS=Candida glycerinogene... [more]
RL44_DEBHA2.127e-4380.2060S ribosomal protein L44 OS=Debaryomyces hansenii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_B03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933058 ID=CK933058; Name=CK933058; organism=Citrus sinensis; type=EST; length=597bp
GGGGAGTTACCCTTACGCTTCATTTGGAAGTTACGAAGAGCTCTCACCTC
NTCGTCGCCGCCGCCGGCCATCATGGTGAACGTTCCCAAGACTAAGAAGA
CCTACTGCAAGAACAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACA
CAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTA
TGATCGTAAACAGTCTGGCTATGGTGGTCAGACCAAGCCTGTCTTCCACA
AGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGT
TGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAAT
TGGTGGAGACAAGAAGGGAAAGGGAGCATCTCTTTTCTAAATGCCTTTAT
TTTTGTTTGTATGCTTTTTACTTTGCTGCACTTGATGGAACTTTACCCAG
TATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATT
TAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTTTATCAGTTAATTTT
AGAATTGGATTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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