CK933071

Overview
NameCK933071
Unique NameCK933071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:308..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.410e-48
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   83 QNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 1.676e-47
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   83 QNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.676e-47
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.189e-47
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.189e-47
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 297
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:   83 QNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 2.858e-47
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 4.876e-47
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.853e-46
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.420e-46
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   V EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:   83 QNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CK933071 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.675e-45
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    4 QNTQRFIFVVDSNDXXXVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 300
            QNTQ  IFVVDSND   VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:   83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of CK933071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
ARF2_ORYSJ4.410e-4894.95ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.676e-4793.94ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH1.676e-4793.94ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH2.189e-4793.94ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE2.189e-4793.88ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO2.858e-4793.94ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_VIGUN4.876e-4792.93ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA1.853e-4691.92ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA2.420e-4691.92ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_MAIZE2.675e-4589.90ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933071 ID=CK933071; Name=CK933071; organism=Citrus sinensis; type=EST; length=569bp
GGGCAAAACACTCAACGTTTTATCTTTGTGGTTGATAGCAATGATNNNNN
NNGTGTGGTTGAAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATG
AGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCA
AATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACT
TCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAG
GACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCT
TAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAA
TGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTT
ACTACCTACGTTCAGTAGAATGTATTTGTTTGTGCTAGATATTTGATTGG
CACCATACTATAAAGTTTTCTGCATTGTCATTGTAGAGTTTAAATTACCC
TCATTATTCAGAATTCAATGATTTTTTGGCTGTTATTCCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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