CK933079

Overview
NameCK933079
Unique NameCK933079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.008e-38
Identity = 92/210 (43.81%), Postives = 126/210 (60.00%), Query Frame = 3
Query:  195 HQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAAL--KKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSAT----KLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            H+ C ++ ++ SC+AM+SE T +N     N   LL  FL K+T  IQ+  E AN    RIN+P+ + AL DC EL++LS +R+ DS++ L  +   T S+ED H WLSGVLTNHVTCLDGL+  +T     LME  L EL+ RA  SLAI V + P  +NVI+         FP+WVT+ DR LL+ +             DGSG+Y+T+
Sbjct:   45 HKICDQSVNKESCLAMISEVTGLNMADHRN---LLKSFLEKTTPRIQKAFETANDASRRINNPQERTALLDCAELMDLSKERVVDSISILFHQNLTTRSHEDLHVWLSGVLTNHVTCLDGLEEGSTDYIKTLMESHLNELILRARTSLAIFVTLFPAKSNVIEPV----TGNFPTWVTAGDRRLLQ-TLGKDIEPDIVVAKDGSGDYETL 246          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.447e-31
Identity = 87/205 (42.44%), Postives = 120/205 (58.54%), Query Frame = 3
Query:  204 CAKAQDQSSCIAMVSETTSINATTKMNE-VDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEI-QFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            C  AQD   C++ VS+  S    T  ++ + +L  FL  S   +   I V   +K++IN  R Q ALTDC+ELL+LSVD + DS+AA+ KR  S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N  V     LR  + + PSWV+SRDR L+  S             DG+G Y+T+
Sbjct:   54 CKTAQDSQLCLSYVSDLISNEIVTSDSDGLSILKKFLVYSVHQMNNAIPVVRKIKNQINDIREQGALTDCLELLDLSVDLVCDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDEV-----LRPGLGKMPSWVSSRDRKLME-SSGKDIGANAVVAKDGTGKYRTL 251          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.070e-30
Identity = 85/205 (41.46%), Postives = 122/205 (59.51%), Query Frame = 3
Query:  204 CAKAQDQSSCIAMVSETTSIN-ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEI-QFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            C  AQD   C++ VS+  S    TT  + + +L+ FL      +   I V + +K++IN  R + ALTDC+ELL+ SVD ++DS+AA+ KR  S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N +V     LR  + + PSWV+SRDR L+  S             DG+G Y+T+
Sbjct:   54 CKTAQDSQLCLSYVSDLMSNEIVTTDSDGLSILMKFLVNYVHQMNNAIPVVSKMKNQINDIRQEGALTDCLELLDQSVDLVSDSIAAIDKRTHSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDDV-----LRPGLGKMPSWVSSRDRKLME-SSGKDIGANAVVAKDGTGKYRTL 251          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.027e-29
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  204 CAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLV-ELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            C  AQD   C++ VSE      TT+ + V +L  FL K    +   I V   +K++IN  R Q ALTDC+ELL+ SVD ++DS+AA+ KR  S + +A +WLSGVLTNHVTCLD L   +       ++ EL+ RA  +LA+L +++  N  V++Q   +     P WV+SRDR L+  S             DG+G+Y+T+
Sbjct:   54 CKTAQDSQLCLSYVSEIV----TTESDGVTVLKKFLVKYVHQMNNAIPVVRKIKNQINDIRQQGALTDCLELLDQSVDLVSDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELTSFSLSTKNGTVLDELITRAKVALAMLASVTTPNDEVLRQGLGK----MPYWVSSRDRKLME-SSGKDIIANRVVAQDGTGDYQTL 246          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.658e-29
Identity = 84/257 (32.68%), Postives = 133/257 (51.75%), Query Frame = 3
Query:   63 LHTPKASKRKXXXXXXXXXXXMCSATFVAIHCIKAINSNNHWSL---HQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALK--KRRTSSNEDAHAWLSGVLTNHVTCLDGLDG---SATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPS-QXXXXXXXXXXXXDGSGNYKTV 806
            L  PK  K K           + S  F     I    +NN  SL    Q C  A DQ SC A++SE T+++ + K+N +DLL +FL  S   ++ T+ + +  + R N  R +A   DC E++++S DR+  SM  L+       S  + H WLS VLTN++TCL+ +     ++ ++++P+L +L++RA  +LAI V++ P   ++      R    FPSW+T+ DR LL  S +            DG+G +KTV
Sbjct:    9 LSKPKYLKHKNLCLVLSFVAILGSVAFFTAQLISVNTNNNDDSLLTTSQICHGAHDQDSCQALLSEFTTLSLS-KLNRLDLLHVFLKNSVWRLESTMTMVSEARIRSNGVRDKAGFADCEEMMDVSKDRMMSSMEELRGGNYNLESYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARVALAIFVSVLPARDDLKMIISNR----FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTV 260          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 125.946 bits (315), Expect = 2.530e-28
Identity = 81/204 (39.71%), Postives = 118/204 (57.84%), Query Frame = 3
Query:  204 CAKAQDQSSCIAMVSETTSIN-ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            C  AQD   C++ VS+  S    TT+ +   +L+ FL      +   I V   +K++IN  R   ALTDC+ELL+ SVD  +DS+AA+ KR  S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  + +V    ++    + PSWV+S DR L+  S             DG+G+Y+T+
Sbjct:   50 CKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLEELISRAKVALAMLASLTTQDEDV----FMTVLGKMPSWVSSMDRKLME-SSGKDIIANAVVAQDGTGDYQTL 247          
BLAST of CK933079 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 58/207 (28.02%), Postives = 100/207 (48.31%), Query Frame = 3
Query:  219 DQSSCIAMVSET-TSINATTKMNEVDLLLIFLSKSTSNIQET-IEVANHVKHRINSPRGQAALTDCV----ELLELSVDRITDSMAALKKRR---TSSNEDAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRL-LLRPSQXXXXXXXXXXXXDGSGNYKTV 806
            D+ SC   + E  T+ ++ +++   DLL+I L  S   I    I V    K        +  L +      E++E + DR+  S+  L         S E+ H WLSGVLT+++TC+D + DG+  + +EP+L +L+++A  +LA+ ++ISP +   +           PSW++  D+  L   ++            DG+G Y TV
Sbjct:   27 DKHSCQNFLLELKTASSSLSEIRRRDLLIIVLKNSVRKIDMAMIGVMEDTKQHEEMENDKLCLKEDTNLFEEMMESAKDRMIRSVEELLGGEFPYLGSYENIHTWLSGVLTSYITCIDEIGDGAYKRRVEPQLQDLISKAKVALALFISISPRDNTELNSVVPNS----PSWLSHVDKKDLYLNAEALKKIADVVVAKDGTGKYNTV 229          
The following BLAST results are available for this feature:
BLAST of CK933079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PME1_FICAW6.008e-3843.81Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME21_SOLLC5.447e-3142.44Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME22_SOLLC2.070e-3041.46Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME3_SOLLC1.027e-2939.60Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME18_ARATH6.658e-2932.68Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME1_SOLLC2.530e-2839.71Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME42_ARATH4.336e-1228.02Probable pectinesterase/pectinesterase inhibitor 4... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_H11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933079 ID=CK933079; Name=CK933079; organism=Citrus sinensis; type=EST; length=807bp
GCGGGAGAGAGCAACACTTCACAATAATCATNNNTACAATCGACCGGCCT
CTGCTACTACAGCTACACACGCCAAAAGCCTCTAAACGTAAAATTCTCCT
TCTAATTCTTTCCGTGGTTTCCGTGATGTGCTCGGCTACATTTGTTGCCA
TACACTGTATCAAAGCTATCAACTCAAACAATCATTGGTCACTGCATCAA
TTTTGTGCTAAAGCCCAGGACCAGTCATCGTGCATAGCCATGGTTTCAGA
AACAACCTCAATTAATGCAACCACAAAAATGAACGAGGTTGATCTGTTAC
TTATCTTCTTGAGCAAGTCCACATCAAACATACAAGAAACTATCGAGGTG
GCCAATCACGTCAAGCATCGGATCAACAGCCCTAGAGGACAAGCGGCTTT
GACTGATTGTGTGGAGTTGTTGGAGTTATCCGTCGATAGAATTACAGATT
CCATGGCGGCTCTTAAAAAAAGGAGGACAAGTTCCAACGAAGATGCGCAT
GCATGGCTAAGTGGCGTTCTTACTAACCACGTCACGTGCTTGGACGGCCT
AGATGGCTCAGCTACGAAGTTGATGGAGCCAAGGCTCGTTGAGTTGATGG
CAAGAGCTGCAAATTCTCTAGCCATTTTAGTGGCAATTTCCCCATACAAC
ACCAACGTCATCCAGCAATATTACTTGAGAAAAGAAATTCAATTTCCGTC
GTGGGTGACAAGCAGGGACCGGTTGCTTTTACGGCCTTCTCAGGCTGAAG
CAGCTAAGGCCAACGTTGTGGTGGCTAAGGATGGAAGTGGAAACTATAAG
ACTGTGA
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