CK933112

Overview
NameCK933112
Unique NameCK933112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6075 contig Csv1_Contig6075:710..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK933112 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.243e-21
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:    5 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGSTAFQNPTAGAEGSW 172
            EKCMRVLLYRDRSA+NKLQIAKITEEG T+SQPY+LKT+W  ++F NPTAGA GSW
Sbjct:  191 EKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246
The following BLAST results are available for this feature:
BLAST of CK933112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSB4_ARATH3.243e-2180.36Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933112 ID=CK933112; Name=CK933112; organism=Citrus sinensis; type=EST; length=445bp
GGGGGAAAAGTGCATGCGTGTGCTCCTGTATCGTGATAGATCTGCCGTCA
ACAAGCTGCAGATAGCAAAGATCACTGAAGAAGGGACAACAATTTCCCAG
CCCTACGCATTGAAGACGTTCTGGGGATCCACTGCATTCCAGAATCCAAC
AGCAGGTGCTGAGGGATCATGGTAGTTGGCATGAGATAGCTTCTTTCATG
TCTCTTTCCCTGTGTTACTATGGAGTTTGTAGCTCCTTTCATGTCTTTTT
CCCCGTGTTACTTGTGGAATTTAAGGACACATAATGGTTATCAGAATCAA
GCATCTTTATCTTTGTTTTAAAGCCGATGACTTGTAAGGTGCCACTTGAT
CCATAGGTTCTGATGGTGAGATGTTGGCTTGTGAGAGCAACTTTTATGTT
AAAATGATTTGAAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
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