CK933126

Overview
NameCK933126
Unique NameCK933126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: T112A_ARATH (TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 75/124 (60.48%), Postives = 85/124 (68.55%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGY-XXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDEV 442
            MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSMGY                  FL K            GALVCPETGRKFPVNKGIPNMLLHEDEV
Sbjct:    1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV 124          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: T112B_ARATH (TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.629e-31
Identity = 71/124 (57.26%), Postives = 80/124 (64.52%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGY-XXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDEV 442
            MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM Y                  FL KF           G+LVCPETGRKF V+KGIPNMLLHEDEV
Sbjct:    1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLHEDEV 124          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: TR112_MOUSE (tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.034e-19
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYXXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDE 439
            M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ ++                   FL K            G L CPE+GR FP+++GIPNMLL+++E
Sbjct:    1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADTLN-LAEVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLNDEE 122          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: TR112_BOVIN (tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYXXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDE 439
            MRLLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  + +                 FL K            G L CPE+GR FP+++GIPNMLL ++E
Sbjct:    1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADHL-HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLSDEE 122          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: TR112_HUMAN (tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYXXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDE 439
            M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ ++                   FL              G L CPE+GR FP+++GIPNMLL E+E
Sbjct:    1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRLIQVPKGPVEGYEENEE-FLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEE 122          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: TR112_DROME (TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   74 MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYXXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDEV 442
            M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++                      L K            G L CPETGR FP++ GIPNMLL+EDEV
Sbjct:    1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLLNEDEV 124          
BLAST of CK933126 vs. ExPASy Swiss-Prot
Match: TR112_DICDI (TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   74 MRLLTHNMLSSNIKG-VANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYXXXXXXXXXXXXXXXXXFLMKFXXXXXXXXXXXGALVCPETGRKFPVNKGIPNMLLHEDEV 442
            M++LTHNM++   K  +  GFPL +E  + I  + +FN +F KNI+PK++W  + + S  + +                 FL              G+L CP   R +P++KGIPNMLL EDE+
Sbjct:    1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGIAEIS--IKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSLTCPNCQRVYPIDKGIPNMLLREDEI 122          
The following BLAST results are available for this feature:
BLAST of CK933126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
T112A_ARATH1.486e-3460.48TRM112-like protein At1g22270 OS=Arabidopsis thali... [more]
T112B_ARATH7.629e-3157.26TRM112-like protein At1g78190 OS=Arabidopsis thali... [more]
TR112_MOUSE1.034e-1940.65tRNA methyltransferase 112 homolog OS=Mus musculus... [more]
TR112_BOVIN1.350e-1940.65tRNA methyltransferase 112 homolog OS=Bos taurus G... [more]
TR112_HUMAN1.263e-1738.21tRNA methyltransferase 112 homolog OS=Homo sapiens... [more]
TR112_DROME2.383e-1638.71TRM112-like protein OS=Drosophila melanogaster GN=... [more]
TR112_DICDI3.804e-1433.87TRM112-like protein OS=Dictyostelium discoideum GN... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_D10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933126 ID=CK933126; Name=CK933126; organism=Citrus sinensis; type=EST; length=622bp
GGGGACTTTGTTTAGCGATATGAAGTAGTGGCAGGCGCTCACAGGGACAG
CGAGGGGTTAGAGAAAAAGGAAGATGAGGCTTCTAACACACAACATGTTA
TCATCTAACATCAAGGGAGTCGCCAACGGCTTCCCTCTCCTGATCGAGGT
GGAGAAAGTCATCGAAAAGCAGGTGGATTTCAACCCCGATTTTCTAAAAA
ATATATTCCCGAAGATCGAGTGGCAGGCGCTTGTCCAGGCGTCGCGGTCC
ATGGGCTACTCTGAGCTCCCCGAGGAGTCGCCCGAATCGTCGATGCTTGA
CTCGGACGATTTTTTGATGAAGTTCCACCATGTGCTCCTGGAGCTGCATC
TGGAAGAGGGTGCTCTGGTTTGTCCTGAGACAGGGAGAAAGTTTCCGGTT
AATAAGGGGATTCCTAATATGCTGCTCCATGAAGATGAGGTCTGATTTTG
TTGGGTTTTCTGTTTATTGCAGTTGAGAATTAGGGTTAGGGTTTTGGGTT
TTACTGAATAGAAGAAACTGTTTGTTTGATTGTGATAATGACCATGTGAT
GCTTTCTCAATTATGAAATGCAATGAGCGGTTTTAATTTGATACAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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