CK933256

Overview
NameCK933256
Unique NameCK933256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933256_ssr844 microsatellite CK933256_ssr844:844..855. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933256_ssr29 microsatellite CK933256_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig899 contig Csv1_Contig899:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: SET_DROME (Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.803e-47
Identity = 90/200 (45.00%), Postives = 139/200 (69.50%), Query Frame = 1
Query:  175 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF----TSLDDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F     +  ++G     T+T IKWKEG  +   +  +  GNK+    E  +FF WFS     D  D + DE+AE+IK+DLWPNPL Y+
Sbjct:   32 ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS-----DNTDPVNDEIAELIKDDLWPNPLQYY 226          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: SET_HUMAN (Protein SET OS=Homo sapiens GN=SET PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 8.157e-47
Identity = 94/219 (42.92%), Postives = 140/219 (63.93%), Query Frame = 1
Query:  106 ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            A  G   K E+E  E        +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:   29 ASAGLPKKGEKEQQE--------AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 233          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: SET_RAT (Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.391e-46
Identity = 92/216 (42.59%), Postives = 143/216 (66.20%), Query Frame = 1
Query:  127 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:   23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: SET_MOUSE (Protein SET OS=Mus musculus GN=Set PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.391e-46
Identity = 92/216 (42.59%), Postives = 143/216 (66.20%), Query Frame = 1
Query:  127 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:   23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL2_HUMAN (Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.704e-33
Identity = 75/212 (35.38%), Postives = 125/212 (58.96%), Query Frame = 1
Query:  118 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            K+ KV+ E+ E+    +   ++ L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G   P    H   GN+   A  SFF+WFS+    +      D +AEIIK DLW NPL Y+
Sbjct:  196 KQRKVKRESRERNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEF-QRNRSGRLVSHSTPIRWHRGQE-PQARRH---GNQD--ASHSFFSWFSNHSLPEA-----DRIAEIIKNDLWVNPLRYY 395          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL2_MACFA (Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.547e-32
Identity = 74/212 (34.91%), Postives = 125/212 (58.96%), Query Frame = 1
Query:  118 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            K+ KV+ E+ ++    +   ++ L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G   P    H   GN+   A  SFF+WFS+    +      D +AEIIK DLW NPL Y+
Sbjct:  196 KQRKVKRESRQRNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRIPILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEF-QRNRSGRLVSHSTPIRWHRGQE-PQARRH---GNQD--ASHSFFSWFSNHSLPEA-----DRIAEIIKNDLWVNPLRYY 395          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL4_HUMAN (Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.264e-31
Identity = 78/225 (34.67%), Postives = 123/225 (54.67%), Query Frame = 1
Query:   85 ATKSKMVADKGKKTK--VEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            A + K V  K KK    V+EE   +   ++   ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP L  ++S +D+ + RY+ +LEVE+ K  ++G    F F  NPYF +  L K +      G +   +T I+W  G      ++  ++GN  P    SFF WFSD    +      D +AEIIK +LWPNPL Y+
Sbjct:  172 AMEEKKVVQKEKKVAGGVKEETRPRAP-KINNCMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEY-ERRSSGRVVSLSTPIRWHRGQDPQAHIHRNREGNTIP----SFFNWFSDHSLLEF-----DRIAEIIKGELWPNPLQYY 385          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL2_MOUSE (Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.264e-31
Identity = 70/212 (33.02%), Postives = 121/212 (57.08%), Query Frame = 1
Query:  118 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            +K +  +E+ E+    +   ++ L+ IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L+++ D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G   P   N      +     ESFF WFS+    +      D +AEIIK DLW NP+ Y+
Sbjct:  189 RKQRKAKESRERSAQRMESILQALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINQRDRDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEF-QRNRSGRLVSHSTPIRWHRGQE-PQAYNRRSHDTR-----ESFFNWFSNHSLPEA-----DRIAEIIKNDLWVNPVRYY 388          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL6_HUMAN (Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 72/194 (37.11%), Postives = 114/194 (58.76%), Query Frame = 1
Query:  172 LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            L +  L+ IQ EL+ +N EA   +L+VE+++ +I +   ++RNDII++IP FW+TAF  HP L  ++  +D ++  YL++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G G P    H    N+  +   SFFTWFSD    ++     D +A+IIKEDLW NPL Y+
Sbjct:  200 LHLNPLESIQLELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHHPQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVY-EVRSFGQVVSFSTLIMWRRGHG-PQSFIHR---NRHVIC--SFFTWFSDHSLPES-----DRIAQIIKEDLWSNPLQYY 381          
BLAST of CK933256 vs. ExPASy Swiss-Prot
Match: TSYL1_PONAB (Testis-specific Y-encoded-like protein 1 OS=Pongo abelii GN=TSPYL1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.312e-30
Identity = 74/217 (34.10%), Postives = 123/217 (56.68%), Query Frame = 1
Query:  118 KKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTSLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 753
            ++ ++EEE  E+         L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G        HE +   R   +   SFFTWFSD    ++     D++AEIIKEDLWPNPL Y+
Sbjct:  207 EEDRLEEEAREEEGPWPLHEALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEY-EVRSSGRVVSLSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DKIAEIIKEDLWPNPLQYY 409          
The following BLAST results are available for this feature:
BLAST of CK933256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
SET_DROME2.803e-4745.00Protein SET OS=Drosophila melanogaster GN=Set PE=1... [more]
SET_HUMAN8.157e-4742.92Protein SET OS=Homo sapiens GN=SET PE=1 SV=3[more]
SET_RAT1.391e-4642.59Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2[more]
SET_MOUSE1.391e-4642.59Protein SET OS=Mus musculus GN=Set PE=1 SV=1[more]
TSYL2_HUMAN6.704e-3335.38Testis-specific Y-encoded-like protein 2 OS=Homo s... [more]
TSYL2_MACFA2.547e-3234.91Testis-specific Y-encoded-like protein 2 OS=Macaca... [more]
TSYL4_HUMAN1.264e-3134.67Testis-specific Y-encoded-like protein 4 OS=Homo s... [more]
TSYL2_MOUSE1.264e-3133.02Testis-specific Y-encoded-like protein 2 OS=Mus mu... [more]
TSYL6_HUMAN2.816e-3137.11Testis-specific Y-encoded-like protein 6 OS=Homo s... [more]
TSYL1_PONAB5.312e-3034.10Testis-specific Y-encoded-like protein 1 OS=Pongo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_F05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933256 ID=CK933256; Name=CK933256; organism=Citrus sinensis; type=EST; length=881bp
GGGGGCCACTGGGGTTTTAGGCACTCGTCGAGCGAGCGAGTTAGGGTTAT
TTAATTTTTATTTTATTTGTTTGTTATTTTAATAGCTACCAAGAGCAAAA
TGGTGGCAGACAAGGGCAAAAAAACCAAAGTTGAAGAAGAAAACGCAGAG
CAAATTGACTCAGAACTTGTTCTTTCCATCGAGAAACTCCAAGAGATCCA
AGACGAGCTTGAAAAGATTAACGAAGAGGCAAGCGAGAAAGTCTTGGAGG
TTGAGCAGAAATACAGTGAGATACGCAAGCCAGTCTATGATAAGCGAAAT
GATATCATCAAATCCATACCTGACTTCTGGTTAACTGCCTTTATTAGTCA
TCCTGCTCTCGGTGAACTTTTGAGTGAAGAGGATCAGAAGATATTCAGGT
ACTTGAGCTCTCTGGAAGTGGAGGATTTTAAAGATGTCAAATCAGGATAC
TCCATCACATTTAACTTCTCCCCCAATCCCTATTTTGAAGATAACAAACT
TACCAAGACTTTCACCTCCCTTGATGATGATGGTTCAATGAAAATTACTG
CTACATCAATCAAGTGGAAAGAGGGCATGGGCATACCAAATGGAGTTAAT
CATGAGAAGAAAGGAAACAAGCGGCCATTGGCGGAAGAAAGCTTCTTTAC
CTGGTTCAGTGATACCCAAGAGAAGGATACTATTGATGGTATCCAAGATG
AGGTTGCAGAGATTATCAAGGAGGATTTATGGCCCAATCCTCTCACTTAT
TTTAACAATGAAGCTGATGAAGAGGAGTTTGAAGGCGATGAAGAGGGTAA
AGAAGATGATGACTCTGAAGATGATGAAGATGATCANGAGGAAGATGATG
ATGATGAAGACGGTGATGNNNAAGGCAACTG
back to top