CK933275

Overview
NameCK933275
Unique NameCK933275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933275_ssr639 microsatellite CK933275_ssr639:639..650. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933275_ssr662 microsatellite CK933275_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1553 contig Csv1_Contig1553:1..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32
Identity = 74/133 (55.64%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  417 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQGTTEFVYLDXXXXXXXXXXXXXXVMPAPPPRPTSMHHGAY-PDLLQYAQIL-SSDDATFNYYTSNLFN 809
            RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET            LKFKGTKAKLNFPERVQG T    +                 P PP   T+     Y  D+LQYAQ+L S+++   +YYTS LF+
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQDILQYAQLLTSNNEVDLSYYTSTLFS 167          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.696e-31
Identity = 77/149 (51.68%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  171 HGKRPLPLEASPEEKEKEQDNN-FPAWTTHES-DMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ 611
            +GKRP   + S E+KE + D N FP ++     DM AMVSALTQVIG              V  +   NP              R+RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTFET            LKFKG+KAKLNFPER Q
Sbjct:    7 YGKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQPVVYNQQDPNPPAPPTQDQGLL---RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQ 152          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 78/152 (51.32%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  171 HGKRPLPLEASPEEKEKEQDNN-FPAWTTH-ESDMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGT---RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ 611
            +GKRP       E +E+E+D N FP ++   + DM  MVSALTQVIG                  S  NP           +     RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET            LKFKG+KAKLNFPERVQ
Sbjct:    2 YGKRPF---GGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSIDDNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQ 150          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21
Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 3
Query:  174 GKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQGTTEFVYLDXXXXXXXXXXXXXXVMPAPPPRPTSMHHGAYPDLL--QYAQILS-SDDATFN 785
            GKRPL  E+    +E++++    + T  ESD+S  VS LT                  + ++SS   L            +R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTF+T             +F+G KAKLNFPE ++     +Y                V P  PP P +      PD+L  QY    S S D++ N
Sbjct:    4 GKRPLSPESMAGNREEKKELCCCS-TLSESDVSDFVSELT-----------GQPIPSSIDDQSSSLTLQEK-------SNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLY-----PSPATSHDRIIVTPPSPPPPIA------PDILLDQYGHFQSRSSDSSAN 180          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.308e-20
Identity = 58/137 (42.34%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  267 MSAMVSALTQVIGXXXXXXXXXXXXXX---------------------VKEESSDNPLXXXXXXXXXXEGT-RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ 611
            MSAMVSALTQV+                                     + +SS NP+          E   ++R YRGVRQRPWGKWAAEIRDP +AARVWLGTF+T            L+F+G KAKLNFPE V+
Sbjct:    1 MSAMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVR 137          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.046e-18
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  417 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERV 608
            R + YRGVRQRPWGKWAAEIRDP KA RVWLGTFET            L+F+G+KAKLNFPE V
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENV 120          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.046e-18
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  420 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ 611
            RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+             L+F+G KAKLNFPE V+
Sbjct:  182 RRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVK 245          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  417 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPE 602
            R+  YRG+RQRPWGKWAAEIRDP+K +R WLGTF+T             + +GTKAK+NFPE
Sbjct:  124 RKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  417 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFPE 602
            R+  YRG+RQRPWGKWAAEIRDP++ AR+WLGTF+T             + +G+KAK+NFPE
Sbjct:  121 RKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPE 182          
BLAST of CK933275 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.241e-15
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  417 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFP 599
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T            +K +G KAKLNFP
Sbjct:   46 RKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
The following BLAST results are available for this feature:
BLAST of CK933275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
EF113_ARATH4.247e-3255.64Ethylene-responsive transcription factor ERF113 OS... [more]
EF115_ARATH4.696e-3151.68Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH5.191e-3051.32Ethylene-responsive transcription factor ERF114 OS... [more]
EF112_ARATH1.977e-2136.71Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH8.308e-2042.34Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH2.046e-1867.19Ethylene-responsive transcription factor RAP2-6 OS... [more]
ABR1_ARATH2.046e-1867.19Ethylene-responsive transcription factor ABR1 OS=A... [more]
RAP22_ARATH7.278e-1658.06Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH9.505e-1656.45Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF71_ARATH1.241e-1560.66Ethylene-responsive transcription factor ERF071 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_D11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933275 ID=CK933275; Name=CK933275; organism=Citrus sinensis; type=EST; length=871bp
GGGGCTCCCATTCAATCCTCAACTTCCATGTCTACAGGTCTGTTAACAAA
ACCAAACAAAACAATTACTTTTTCCGTTGTATGTAATAAAATCCAATAAA
AAAATTATTGCATTACATTAGAGTTTATAGAAGTGCTTATTGTAACCGCA
GAAAAGTGGATCATCGAAGGCATGGAAAGCGGCCACTTCCACTGGAAGCA
TCACCGGAGGAGAAAGAGAAAGAACAAGACAACAACTTCCCTGCTTGGAC
TACTCATGAATCAGACATGTCTGCCATGGTTTCCGCTCTTACACAAGTAA
TTGGCACCACTACCACCGACGCCGACGCCGACCCCTCGCCGGCAGCCGTT
AAAGAAGAATCCTCCGATAACCCACTTCAACAAACTCAAACTCAAGATCA
AGATCAAGAAGGTACAAGGAGGAGACATTACAGAGGAGTAAGACAAAGAC
CTTGGGGCAAATGGGCAGCCGAAATTAGAGACCCTAAAAAGGCAGCACGA
GTATGGCTAGGTACATTTGAGACTGCTGAAGATGCAGCCATGGCTTATGA
TAAAGCTGCCCTCAAATTCAAAGGCACCAAAGCTAAGCTTAATTTCCCTG
AAAGAGTTCAGGGTACTACTGAGTTTGTGTATTTAGATTCATCATCATCA
AGCTCTGCCTTTCATCATCATCATGAATCGGTGATGCCTGCTCCTCCTCC
TAGGCCTACATCAATGCACCATGGTGCATACCCGGACTTGCTTCAATATG
CTCAAATTCTATCTTCTGATGATGCTACTTTTAATTACTATACGTCCAAT
CTCTTTAATCCACAATCATCATCTTGTTCTTCTTCTACTCCTTCGACGTT
TTCATCATCTACCACCTCATT
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