CK933293

Overview
NameCK933293
Unique NameCK933293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933293_ssr72 microsatellite CK933293_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP16_ARATH (Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 3.730e-79
Identity = 153/264 (57.95%), Postives = 187/264 (70.83%), Query Frame = 1
Query:  121 MGRL---ANLMGIIKDKVSQSKAAIIS---KPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLXXXXXXVEMDKEEEKVSALVNIXXXXXXXXXXXXXXQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACAL 894
            MGR+   A+L+G IKDK SQSKAA++S   K KTL+ HLS+LRATTHDPSTPP  + L  +LS G  SRATAS+ +E++M+RL TT DA VA+KSLI +HHIVKHG FILQDQLSV+P++GGRNYLKLS FRD  +PL WELSSWVRWYALYLEHLLSTSR++GFF+      +  ++ EE VS+L N               + CK PD     G  L D I  LVGEDY+S+INE+  R +EF  R   LS GD++EL CAL
Sbjct:    1 MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAVILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPASGGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYEEMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYTRFNEFKERSNTLSFGDTIELVCAL 264          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP17_ARATH (Putative clathrin assembly protein At5g10410 OS=Arabidopsis thaliana GN=At5g10410 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.161e-26
Identity = 80/256 (31.25%), Postives = 126/256 (49.22%), Query Frame = 1
Query:  124 GRLANLMGIIKDKVSQSKAAII---SKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAG-GRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLXXXXXXVEMDKEEEKVSALVNIXXXXXXXXXXXXXXQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRL---GCLSLGD 870
            G   +++G  KDK S  KA ++          +HL+LL++TT  P+ PP+   ++ ++S+ +S  A A+    A + RL+ T +A VA KSLI +H ++K            +   G GRN LKL+ F D ++ LT ELS W+RWY  YL+ L    +VLG F        +  +E+++VS+                   +C  P+   +  N +VD+I  LV EDY   +  V +R+     RL   G   +GD
Sbjct:    3 GLKTHIIGKFKDKASIGKARLVHSFGSTAVKYIHLALLKSTTRTPNKPPNSDYVSAVISYSNSRYAPAA--FSAALWRLRVTKNAIVATKSLIVIHKLIKSSR-------DKFEGLGHGRNNLKLNEFSDKSSNLTLELSQWIRWYGQYLDRLSWVPKVLGSFPNLLVNPKDKVEEKDRVSSYQTGYIIRQTDSLVSFFEHICTRPEIPPMFQNKIVDEIRELVIEDYFKIVRLVMVRLQVLFERLIKPGVKPIGD 249          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP18_ARATH (Putative clathrin assembly protein At5g65370 OS=Arabidopsis thaliana GN=At5g65370 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.191e-22
Identity = 80/255 (31.37%), Postives = 126/255 (49.41%), Query Frame = 1
Query:  121 MGRLANLMGIIKDKVSQSKAAII---SKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVK-----HGSFILQDQLS----VYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLXXXXXXVEMDKEEEKVSALVNIXXXXXXXXXXXXXXQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRL 849
            MG+LA L GI+KD+ SQ K  ++   S     T+ L+LL+AT+H  + PP  K +T L S            ++A++ RL+ T D  VA K LI +H +VK     +G   L++ ++    +Y + GG N LKL++   N++  T EL+ WV+WY  YL+  LS + VLG          +   E ++VS+                   +   P     + N +V ++  L+ +DY SAI  + IR  E N R+
Sbjct:    1 MGKLATLNGILKDEASQMKLNVVHLCSSVNAKTIDLALLKATSHTSNNPPSDKYVTFLQST--IDTCYGPDTVDAILHRLRVTTDVCVAAKCLILLHKMVKSESGYNGEDSLRNNINHRTLIY-TQGGSN-LKLNDLNVNSSRFTRELTPWVQWYKQYLDCYLSIAEVLGITPNIKEKNEDKRLETQRVSSYPMDCILKQIDFLVELFEHISDRPKAPQSKLNKIVIEMTELMVQDYFSAIRLMRIRFEELNVRV 251          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP6_ARATH (Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.044e-17
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  142 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDP--KRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGF 597
            +G IKD  + S A + S+ K L +  ++++AT H  S P +   +R+ +  S     RA  +  I AL  RL  T +  VAIK LI +H  ++ G    +++L  Y   G  + L++SNF+D+T+PL W+ S+W+R YAL+LE  L   RVL +
Sbjct:   11 VGAIKDSTTVSIAKVNSEFKDLDV--AIVKATNHVESAPKERHIRRIFSATSVVQP-RADVAYCIHALAKRLSKTRNWVVAIKVLIVIHRTLREGDPTFREELLNYSHRG--HILRISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKY 159          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP7_ARATH (Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  145 GIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGH--SSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGF 597
            G +KD  +   A + S+ K L +  ++++AT H  S PP  + +  + S       RA  +  I AL  RL  T +  VA+K LI +H  ++ G    +++L  Y     R+ L++SNF+D+T+PL W+ S+WVR YAL+LE  L   RVL +
Sbjct:   12 GALKDTTTVGLAKVNSEFKDLDI--AIVKATNHVES-PPKERHVRKIFSATSVIQPRADVAYCIHALSKRLSKTRNWVVAMKVLIVIHRTLREGDPTFREELLNYSHR--RHILRISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLKY 159          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP8_ARATH (Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 50/153 (32.68%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  145 GIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAV--IEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGF 597
            G +KD        + S+     L +++++AT H    PP  + L  + +    +RA A     I AL  RL  T + +VA+K+LI +H +++ G    +++L  +   G    L+LSNF+D+++P+ W+ S+WVR YAL+LE  L   RVL +
Sbjct:   12 GALKDSTKVGLVRVNSE--YADLDVAIVKATNH-VECPPKDRHLRKIFAATSVTRARADVAYCIHALSRRLHKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQRG--RILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKY 159          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP9_ARATH (Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 43/130 (33.08%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  211 LHLSLLRATTHDPSTPPDPK-RLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGF 597
            L +++++AT H    P D   R   L +     RA  +  I AL  RL  T + +VA+K+L+ +H +++ G    +++L  +   G    +++SNF+D+++P+ W+ S WVR YAL+LE  L   RVL +
Sbjct:   32 LDVAIVKATNHVECPPKDRHLRKIFLATSAIRPRADVAYCIHALSRRLHKTRNWTVALKALLVIHRLLRDGDPTFREELLNFSQKG--RIMQISNFKDDSSPVAWDCSGWVRTYALFLEERLECFRVLKY 159          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP1_ARATH (Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 46/144 (31.94%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  142 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 573
            +G++KD+ S   A + S      L +++++AT+HD     D K +  +LS    SR    A + ++  RL+ T D  VA+K+L+ VH ++  G  + Q+++ +Y +  G   L +S+FRD     +W+ S++VR YA YL+  L
Sbjct:    9 IGVVKDQTSIGIAKVASNMAP-DLEVAIVKATSHDDDQSSD-KYIREILSLTSLSRGYVHACVTSVSRRLKKTRDWIVALKALMLVHRLLNEGDPLFQEEI-LYATRRGTRILNMSDFRDEAHSSSWDHSAFVRTYASYLDQRL 149          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP10_ARATH (Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  130 LANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSS---RATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGF 597
            L   +G IKD  + S A + S  K L +  ++++AT H     P  +R    +    S+   RA  +  I AL  RL  TH+ +VA+K+LI +H  ++       +++  Y S    + L +S+F+D++ P  W  S+WVR+YAL+LE  L   RVL +
Sbjct:   11 LRRYLGAIKDTTTVSLAKVNSDYKELDI--AIVKATNHVER--PSKERYIRAIFMAISATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINY-SRSRSHMLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKY 164          
BLAST of CK933293 vs. ExPASy Swiss-Prot
Match: CAP3_ARATH (Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  115 LNMGRLANLMGIIKDKVSQSKAAIISKPKTLT-LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATASAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 573
            +   +L   +G +KD+ S   A +  +  +LT L +++++AT HD   P + K +  +L     SR   SA +  L  RL  T + SVA+K+LI +  ++  G    + ++  + +  G   L +S+FRD +   +W+ S++VR YALYL+  L
Sbjct:    1 MGSSKLKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHD-DYPAEDKYIREILCLTSYSRNYVSACVATLSRRLNKTKNWSVALKTLILIQRLLTDGDRAYEQEI-FFATRRGTRLLNMSDFRDASQSDSWDYSAFVRTYALYLDERL 152          
The following BLAST results are available for this feature:
BLAST of CK933293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAP16_ARATH3.730e-7957.95Putative clathrin assembly protein At4g40080 OS=Ar... [more]
CAP17_ARATH8.161e-2631.25Putative clathrin assembly protein At5g10410 OS=Ar... [more]
CAP18_ARATH4.191e-2231.37Putative clathrin assembly protein At5g65370 OS=Ar... [more]
CAP6_ARATH9.044e-1736.36Putative clathrin assembly protein At4g25940 OS=Ar... [more]
CAP7_ARATH5.862e-1635.29Putative clathrin assembly protein At5g57200 OS=Ar... [more]
CAP8_ARATH2.228e-1532.68Putative clathrin assembly protein At2g01600 OS=Ar... [more]
CAP9_ARATH7.166e-1433.08Putative clathrin assembly protein At1g14910 OS=Ar... [more]
CAP1_ARATH7.166e-1431.94Probable clathrin assembly protein At4g32285 OS=Ar... [more]
CAP10_ARATH1.596e-1332.70Putative clathrin assembly protein At5g35200 OS=Ar... [more]
CAP3_ARATH2.085e-1330.52Putative clathrin assembly protein At4g02650 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_C03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933293 ID=CK933293; Name=CK933293; organism=Citrus sinensis; type=EST; length=894bp
GGGGAAGGGAAAGTGGGAAACCATATTCCTTCTTCTTCAATTCAATTCCG
GTGCCTTCTTTAATTATCCTTTAAATAAATAAAATAAAATTTGCGCCTCG
GCTGCAGGATCTTTCTGAACATGGGGCGCCTGGCAAATCTAATGGGCATA
ATCAAAGACAAGGTGTCACAGAGCAAAGCAGCCATAATCTCCAAACCCAA
AACCCTAACTCTCCATCTATCTCTTCTACGAGCCACAACTCACGACCCTT
CCACGCCGCCCGATCCGAAACGCCTGACCACGCTCCTCAGCTTCGGCCAT
AGCTCGCGGGCCACGGCCTCCGCCGTCATCGAAGCCCTCATGGACCGTCT
TCAGACAACCCACGATGCATCCGTCGCCATCAAGTCCCTCATCGCCGTCC
ATCACATCGTCAAACACGGAAGCTTCATTCTCCAAGATCAGCTCTCTGTT
TATCCCTCCGCCGGTGGAAGAAACTATCTTAAATTGTCAAACTTCAGAGA
CAACACGACGCCGCTTACTTGGGAACTCTCTTCGTGGGTCAGATGGTATG
CTTTATATCTCGAACACCTCTTGTCCACTTCTAGGGTTTTGGGTTTCTTC
CTTTCTTCAAGTTCAAGTTCTGTGGAGATGGATAAAGAAGAAGAGAAGGT
GTCGGCGCTCGTGAACATTGATTTGCTCAAAGAGGTCGATTCCTTGCTGA
GTTTGCTTGAACAGATGTGTAAAACGCCTGATTGTTTGCACGTGCGCGGC
AACCCTTTGGTGGACGATATCATGGGATTGGTGGGCGAAGATTACTTGTC
TGCCATAAACGAGGTTTCAATTCGAGTCAGCGAGTTTAACAACAGACTCG
GTTGTTTGAGTTTGGGTGACTCGGTCGAGTTGGCCTGTGCCCTT
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