CK933300

Overview
NameCK933300
Unique NameCK933300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:210..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK933300 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 3 
Query:   33 RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 278
            RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   68 RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CK933300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.089e-3278.05Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004287_B06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933300 ID=CK933300; Name=CK933300; organism=Citrus sinensis; type=EST; length=701bp
GGGGTGGTGATGGAACACAAGTACGTCAGATGCGAATTGCTGAATGCTTG
GTTGGTGATGAGACAGGAATGATTATCTTTACTGCTAGAAATGATCAAGT
GGACCTGATGAAAGAGGGTACTACTGTGATTCTGCGCAATGCAAAAATTG
ACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAAGTGGGGCCGTGTT
GAAGTTGCAGAGCCTGCCAATTTCACCGTGAAGGAAGATAACAACCTCTC
TCTGATTGAATATGAGCTTGTGAATGTTGTAGAAGAGTGAATTTCTGGAC
AGTGTTCACTTACTCACTGCAATGTGACCCAAGAATAAAAAGAAATCCAG
CATATCATAGTACTGTCGTTTATGCGGCATCTCCTGCCCAAAACTGTGTT
GCCTTTAGGAAGAAGAAATCTGGAAGCTATTACTACCCAAGATGCTTTCT
ACCGTTGTGGCAGATCCAGTAGAACCTTTTGATTGGACCTCCAAACAGAT
GGTGATGGCTCTAAAGTTGATAAGTTAAAGCAGCTGGCATTTAGAACTGT
CTTTGGTTTGTTTGCGACCTATTTATTTTTGGAACTCAACTGTTCTTTGG
CTATTAGATTATACTTGGAATATTAATATCGTGAAATGTATGTTATTATA
TATAAGTGTGGTTTTGGCCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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