CK933306

Overview
NameCK933306
Unique NameCK933306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933306_ssr508 microsatellite CK933306_ssr508:508..519. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933306_ssr595 microsatellite CK933306_ssr595:595..612. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933306_ssr32 microsatellite CK933306_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: ARG7_PHAAU (Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  218 LDVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 415
            LD PKG+  VYVGEN   ++IP++ L +P FQ LL QAEEEFG+DH M GLTIPC E +FQ +TS L
Sbjct:   23 LDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89          
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  221 DVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 415
            D PKG+  VYVGE    ++IP+++L +P FQ LL QAEEEFG+DH M GLTIPC E VFQ +TS L
Sbjct:   16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81          
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  218 LDVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 415
            +D PKG+  VYVGE    ++IP++++ +P FQ LL QAEEEFG+DH M GLTIPC E+VFQ +T  L
Sbjct:   15 VDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCL 81          
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  218 LDVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 415
            ++VPKG+ VVYVG+    ++IP+++L +P FQ LL QAEEEFG+DH M GLTIPC+E  F ++TS L
Sbjct:   23 VEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89          
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  218 LDVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDH-DMGLTIPCEEQVFQSLTSML 415
            +DV KG+  VYVGE    ++IP+++L +P FQ LL QAEEEFG+ H + GLTIPC E VFQ +TS L
Sbjct:   23 VDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89          
BLAST of CK933306 vs. ExPASy Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  218 LDVPKGHFVVYVGENRSGYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 415
            +DVPKG+  VYVG+    + IP+++L  P FQ LL QAEEEFG+DH M GLTIPC+E+ F ++T+ L
Sbjct:   24 VDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90          
The following BLAST results are available for this feature:
BLAST of CK933306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ARG7_PHAAU5.655e-1761.19Indole-3-acetic acid-induced protein ARG7 OS=Phase... [more]
AX15A_SOYBN7.386e-1760.61Auxin-induced protein 15A OS=Glycine max PE=2 SV=1[more]
AXX15_SOYBN2.149e-1656.72Auxin-induced protein X15 OS=Glycine max PE=2 SV=1[more]
AX10A_SOYBN1.393e-1556.72Auxin-induced protein X10A OS=Glycine max PE=2 SV=... [more]
AX6B_SOYBN3.103e-1556.72Auxin-induced protein 6B OS=Glycine max PE=2 SV=1[more]
A10A5_SOYBN9.029e-1555.22Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004287_B12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933306 ID=CK933306; Name=CK933306; organism=Citrus sinensis; type=EST; length=791bp
GGGGATCGCCTCACAATAATAATTGAAAAAAAAAGAAAGAAAGAAACTTC
TCTCAGAGCTCTTCTTCTCTATTGTCATTAATTACCCGCACAAGTTCTTC
ATTAGGATGGCCATCAGAAAATCAAACAAGTTGTCTCAAACGGCTGTGAT
TAAGCAAATTCTCAAGAGATGCTCGAGCTTGGGGAAGAAACAAAGCTACG
ATGAACAAGGACTCCCTTTAGATGTCCCAAAAGGTCATTTTGTTGTGTAT
GTTGGTGAAAACAGAAGCGGATACATCATCCCAATAACTTTCTTGACTCG
TCCTGAGTTTCAAAGCCTGCTTCAACAAGCCGAAGAAGAATTTGGCTTTG
ATCATGACATGGGCTTAACCATTCCATGTGAAGAACAAGTGTTCCAGTCC
TTAACATCAATGCTCAGATAAGAAGAATATTGCCGAGCTACGCTGCTAGG
GTACTTGCTTGTTTGTTTTTGGAGAAATTGGCTGATGATGAAGCTGCTTC
AATTGCTTCTCTCTCTCTCTTTTTTTCCTTTTTTCTTTTTCTTTTACAGT
AAATCTAACCCGGCCAACGAAGAATTAATATTTTAACCCATGGATATTAT
TATTATTATTATCTGGGTTAACTATTTTAGAGTTGTAAATCTCAAAAGCA
AACTTATTAGCATTTTCCTCACTGTGGACTCTGGTGTGTGGTGTTGTATA
CTACCAATGTACCCTGTGAGAGATCTAAATATTAAATTAAGCTCTACCTT
CTTTTTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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