CK933371

Overview
NameCK933371
Unique NameCK933371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933371_ssr11 microsatellite CK933371_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933371_ssr66 microsatellite CK933371_ssr66:66..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:83..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 4.131e-91
Identity = 164/221 (74.21%), Postives = 183/221 (82.81%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNCGK 769
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA Q LQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GT+MRRKMW QNM                   S+C GFNCGK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNCGK 221          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.202e-90
Identity = 163/219 (74.43%), Postives = 183/219 (83.56%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 763
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA Q LQKLP+SNNKFTYNCD HTFNYLV++G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+TGT+MRRKMWLQNM                   SVCHGF C
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 5.965e-90
Identity = 161/219 (73.52%), Postives = 178/219 (81.28%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 763
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A Q LQKLP+SNNKFTYNCD HTFNYL DNG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTKM+RK+W +NM                   SVCHGF C
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 5.583e-88
Identity = 159/219 (72.60%), Postives = 177/219 (80.82%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 763
            M Q++LIY+FVARG V+L EYTEF GNF ++A Q LQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTK+RRKMW +NM                   SVC GF C
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 5.993e-74
Identity = 136/220 (61.82%), Postives = 165/220 (75.00%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNN-KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 763
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA Q LQKLP+S+N KFTYNCD HTFN+LV++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENL  QAQ+++  GT++RRK+W QNM                   SVCHGFNC
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.857e-70
Identity = 133/221 (60.18%), Postives = 158/221 (71.49%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNCGK 769
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +   Q Q F    T+M+RK W QNM                   SVC GFNCGK
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK 217          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.599e-66
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 2
Query:  107 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-------------------KAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 763
            MSQK LIY+FVA+G VVLAE+T +SGNF++IA Q LQKLP +++K+TY+CD HTFN+LVDNG+ + VVADES+GR +P  FLERVK++F  +Y                          + A  L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL  QA  F+  G ++RRKMWLQ++                     C GF C
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.351e-33
Identity = 81/214 (37.85%), Postives = 125/214 (58.41%), Query Frame = 2
Query:  119 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 754
            ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN+      FR    + R  MW +N+                    VCHG
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.009e-33
Identity = 79/213 (37.09%), Postives = 123/213 (57.75%), Query Frame = 2
Query:  119 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNK-FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 754
            +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N+      FR    + R  +W +N                     +CHG
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
BLAST of CK933371 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.755e-33
Identity = 77/216 (35.65%), Postives = 125/216 (57.87%), Query Frame = 2
Query:  122 LIYAFVARGNVVLAEYTEFSGNFNSIAYQRLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNCG 766
            +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L+ LM +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L+QQ+  F+    +++  MW +N+                   S C GF  G
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGFRSG 216          
The following BLAST results are available for this feature:
BLAST of CK933371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA722_ARATH4.131e-9174.21Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH1.202e-9074.43Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH5.965e-9073.52Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH5.583e-8872.60Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH5.993e-7461.82Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH6.857e-7060.18Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH4.599e-6653.36Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA713_ARATH1.351e-3337.85Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH3.009e-3337.09Vesicle-associated membrane protein 711 OS=Arabido... [more]
VAM7B_DICDI8.755e-3335.65Vesicle-associated membrane protein 7B OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_D04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933371 ID=CK933371; Name=CK933371; organism=Citrus sinensis; type=EST; length=880bp
GGGGGGAGAGGAGAGAGAGACCTCTTGGAGCTTTAAAACAAAATAAAAAA
TAAAAACAAGCCCAGATCTCATCTCATCTCAACTCAACTCAATTAGTCTC
ATCAAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCGCGCGGAAA
TGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCAATTTCAACTCCATAG
CCTATCAGCGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTCACCTAC
AACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTACACATA
TTGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGGCTTTTC
TGGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGGGGTGGAAAGGCT
GCCACGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAAATTGAA
AGAACTTATGCAGTACTGTGTTGATCATCCTGAGGAGATCAGCAAGCTTG
CGAAGGTTAAGGCTCAAGTTTCAGAAGTCAAAGGTGTTATGATGGAGAAT
ATTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCTACTGGTCGATAA
GACTGAGAACCTTCATCAGCAGGCACAAGACTTTCGGAGTACGGGGACCA
AAATGCGGAGGAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTT
TTGGGAATACTGATTGCCTTGATCCTCATCATAGTCCTCTCTGTTTGCCA
TGGTTTCAACTGCGGAAAATGAGTGCTATTCTCCAGGAGGCTTATATTAC
GCTCTTCTAAGAGCTTCTGTGATGATATTGTGAAAGAGATATATAAATAT
ATATGATCTTGACTTTGTATNTAGTCTAAA
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