CK933378

Overview
NameCK933378
Unique NameCK933378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933378_ssr55 microsatellite CK933378_ssr55:55..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6157 contig Csv1_Contig6157:4..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.025e-86
Identity = 109/133 (81.95%), Postives = 111/133 (83.46%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 133

HSP 2 Score: 120.553 bits (301), Expect = 8.025e-86
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 2 
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            AH AIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRN T
Sbjct:  138 AHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.638e-84
Identity = 103/133 (77.44%), Postives = 109/133 (81.95%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+I
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEII 133

HSP 2 Score: 120.939 bits (302), Expect = 5.638e-84
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            PAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+NN+
Sbjct:  137 PAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNS 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.638e-84
Identity = 103/133 (77.44%), Postives = 109/133 (81.95%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+I
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEII 133

HSP 2 Score: 120.939 bits (302), Expect = 5.638e-84
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            PAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+NN+
Sbjct:  137 PAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNS 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.146e-81
Identity = 97/133 (72.93%), Postives = 105/133 (78.95%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+EV+
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVV 133

HSP 2 Score: 122.865 bits (307), Expect = 1.146e-81
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            AH  IRNDPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRNNT
Sbjct:  138 AHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.544e-81
Identity = 97/133 (72.93%), Postives = 106/133 (79.70%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+E+I
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEII 133

HSP 2 Score: 122.479 bits (306), Expect = 2.544e-81
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            AH+AIR DPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRNNT
Sbjct:  138 AHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.118e-60
Identity = 84/133 (63.16%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVI
Sbjct:    1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVI 133

HSP 2 Score: 85.8853 bits (211), Expect = 1.118e-60
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            P H AIR D R NW+CNPVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR NT
Sbjct:  137 PQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNT 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.457e-60
Identity = 82/133 (61.65%), Postives = 92/133 (69.17%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGA  ++ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                       YGKPTNQGV QLK+QRS +S AEER GR+   LRVLNSYWIN+DSTYKYFEVI
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVI 133

HSP 2 Score: 92.0485 bits (227), Expect = 1.457e-60
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            P H AIR DPRINW+ NPVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR+NT
Sbjct:  137 PQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRHNT 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.230e-60
Identity = 84/133 (63.16%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVI
Sbjct:    1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVI 133

HSP 2 Score: 83.9593 bits (206), Expect = 3.230e-60
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            P H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR NT
Sbjct:  137 PQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNT 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.491e-60
Identity = 84/133 (63.16%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVI
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVI 133

HSP 2 Score: 81.2629 bits (199), Expect = 5.491e-60
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            P H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  137 PFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.491e-60
Identity = 84/133 (63.16%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVI
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVI 133

HSP 2 Score: 81.2629 bits (199), Expect = 5.491e-60
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            P H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  137 PFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197
The following BLAST results are available for this feature:
BLAST of CK933378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PETHY8.025e-8681.9560S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH5.638e-8477.4460S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH5.638e-8477.4460S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA1.146e-8172.9360S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA2.544e-8172.9360S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15B_YEAST1.118e-6063.1660S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15_NEUCR1.457e-6061.6560S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15A_YEAST3.230e-6063.1660S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_RAT5.491e-6063.1660S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB5.491e-6063.1660S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_B12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933378 ID=CK933378; Name=CK933378; organism=Citrus sinensis; type=EST; length=883bp
GGGGATAGCTCTCTCATTGTAAGCGAAAACCCTAGACGCACGGATACTGC
GCATCTCAGCTCAGCTCAGAGCCAATGGGGGCTTACACGTTCGTGTCGGA
GCTATGGAGGAAGAAGCAGTCAGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGTTGGGAGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCC
ACTCGACCTGACAAGGCTCGACGCTTGGGTTACAAGGCCAAGCAGGGTTA
TGTTGTTTATCGTGTGCGGGTAAGGCGCGGTGGTCGGAAGAGGCCTGTTC
CCAAGGGCATTGTGTATGGTAAACCCACAAACCAGGGTGTTACTCAACTG
AAGTTTCAGCGCAGCAAGAGGTCTGTTGCAGAGGAGCGTGCCGGTCGTAA
GTTGGGAGGTCTTAGGGTTCTCAATTCTTACTGGATCAATGAGGACTCCA
CTTATAAGTACTTTGAGGTGATTTGGTTGATCCTGCTCATAATGCCATCC
GTAATGACCCAAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGG
GAACTCCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGG
AAAAGGACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGA
AGAGAAACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGG
TTTTGATGTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGT
TGCCATTTTGAGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATT
TTGAAACCGTACATTCTAAATTAAGACATTTGTGTTTCTTGAGTNCAAAA
AAAAAAGAAAAAAAAAAAAAAAAAAANNNNNNA
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