CK933442

Overview
NameCK933442
Unique NameCK933442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11062 contig Csv1_Contig11062:358..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933442 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.050e-23
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:  283 KIGAKVKVKVPLKVYHVPRVPEHDLSGMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEG--RPVKFFAHLKEDEFDYLD 516
            KIG +V+V  PL+VYHV + P+ D+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  +PV+FFAHL+EDEF+++D
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFVD 96
[Close]
BLAST of CK933442 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:  181 CEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGAKVKVKVPLKVYHVPRVPEHDLS-GMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEGR-PVKFFAHLKEDEFDYL 513
            CEVA+KS++ST                    +  K+G KVKVK PLKVYHVP++PE +L+  M GV+KQYVG WKGK IS N P+KV +  ++  R  VK   HLKE+EF+ +
Sbjct:   62 CEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172
The following BLAST results are available for this feature:
BLAST of CK933442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE8.050e-2358.75Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL2.424e-1946.90Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_E07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933442 ID=CK933442; Name=CK933442; organism=Citrus sinensis; type=EST; length=637bp
GGGGGCAGACGAGTGAAAAGATAGATACACAGAAATCATGACTAGTACAA
GTTTTGCTTTGTTCTCGGCTACTTCTTCGTTGACAAATCGACGGCCACTT
ACGAATGCGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGA
CAATGTTAATGTTAACAAAAGAAGAATCCCTGTGAAGTAGCTGTAAAATC
CAACAATTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCTTCATCAG
CATCAGCGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGCGAAGGTT
AAGGTGAAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTCCGGAGCA
TGATCTGTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGCGTTTGGA
AAGGAAAGAAAATCTCAGCCAATATGCCTTATAAGGTAGCGTTTGTTACT
GAAATTGAAGGCCGTCCTGTCAAGTTCTTTGCACATCTCAAGGAAGACGA
GTTTGATTACCTTGATTAATATTTTTAAATTTTTATTATTTTGAACATGT
TATTCCTTCTCTTTCCTATCTCCATCCTCTACAAATAATATTTTTAGTCT
TTGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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