CK933469

Overview
NameCK933469
Unique NameCK933469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933469 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    4 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 258
            + EGR+AIV E GI  LVE ++ GS +GKE A   LLQLC  S K   L+++EG IPPLVALSQ+G+ RAK KA+ LL + R  R
Sbjct:  667 VGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751          
BLAST of CK933469 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 261
            + EG+ AI EE GI  LVE +E GS +GKE A   LLQLC  S K    ++REG IPPLVAL+++G+ R K KA+ LL Y +  RQ
Sbjct:  616 VREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701          
BLAST of CK933469 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 234
            I EGR AI +E GI  LVE +E GS +GKE A   LLQL   S +   ++++EG +PPLVALSQ+G+ RA+ K +TL
Sbjct:  735 IPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
The following BLAST results are available for this feature:
BLAST of CK933469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB3_ARATH1.670e-1755.29U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB2_ARATH2.411e-1652.33U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB4_ARATH6.566e-1451.95U-box domain-containing protein 4 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004285_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933469 ID=CK933469; Name=CK933469; organism=Citrus sinensis; type=EST; length=549bp
GGGATTGCCGAGGGGAGAGAAGCTATTGTTGAGGAAAACGGGATTGCTGC
TCTTGTGGAGGCTATTGAAGATGGGAGTGTTAAGGGGAAGGAGTTTGCCG
TGTTGACTTTGTTGCAGTTGTGCGCTGAGAGTGTGAAGAACAGGGGATTG
CTGGTTCGAGAAGGAGGGATTCCCCCGCTGGTTGCCCTTTCCCAAACTGG
GAGCGTGAGAGCTAAGCATAAGGCTGAGACGCTTCTTGGGTATCTGAGAG
AACCAAGACAAGAGGGTCCGTCATCAAGTCCTTGAGAGAATGCATAGTTT
AATTACTTTAGAAAGGTAATTATCCTAAGTGGTTGTTTTGATGTATATAG
AGGGTGTGTTTTGGTGGTTTGTACATCGTGGTTGAGAAATTTGGAAGAAT
GATTTGTAGAATTGAGAATGTTAGGGGAAGACTAGCCAGTAAAAACTGAC
CTTTTTGATGTATGATTGTAACTAGATTTTGGGTTTTTCCCCCCACCGTT
ATTGACTAATGTTTTGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top