CK933474

Overview
NameCK933474
Unique NameCK933474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933474 vs. ExPASy Swiss-Prot
Match: TTHL_ARATH (Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.985e-57
Identity = 121/226 (53.54%), Postives = 152/226 (67.26%), Query Frame = 3 
Query:   63 CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPS-------SQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITEXXXXXXXXXXXXXXXXTFQYSATAKT-AEDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKG 716
            CCGS++FAK+M+++ P  S  +A+  AR IWFN V+V  WL+AFSAHPQIG +PS       ++ S +EQSTA AT + S+ QEL++WN  Y+ +FGFIFIICASGRT AE+L  LK+RY NRPI+E EIAA EQMKITE                T   S+   T  +DR+ II GHL  + EA A      P R+R PITTHVLDVS+G+PAAGVEV LE+W G
Sbjct:   13 CCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINSDFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTKPQDRLRIIGGHLNVAAEAKA------PKRSRPPITTHVLDVSRGAPAAGVEVHLEVWSG 231
The following BLAST results are available for this feature:
BLAST of CK933474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TTHL_ARATH6.985e-5753.54Uric acid degradation bifunctional protein TTL OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004285_C03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933474 ID=CK933474; Name=CK933474; organism=Citrus sinensis; type=EST; length=767bp
GGGGAGACACCCGAGAAATGGAGGAGATGATGGTGGTTTTGGATGAGGAG
GAGTTGTTGGGATGCTGCGGTAGCACCAAATTTGCGAAAGAGATGGCGTC
GGCCTCACCTTTTGCATCATTGAATCAAGCCGTCTCAGCAGCTCGACACA
TCTGGTTCAACCTGGTTGATGTAAACGGCTGGCTTGATGCATTTTCGGCT
CATCCTCAGATCGGCCAATCTCCGTCTTCACAGTGGAGCAAGGCCGAGCA
GTCCACTGCTTTAGCAACTGCTAATGAATCTAGCTCGCAGGAACTGTCCG
ACTGGAATAATCGGTACAGGCTGAGATTTGGATTTATATTTATTATATGT
GCATCGGGGAGGACGGCTGCCGAAATACTTGCTGAGTTGAAGAAACGATA
CACAAACAGGCCCATAATTGAGTTTGAGATTGCTGCTCAGGAGCAAATGA
AAATAACTGAATTACGTCTGGCAAAGCTCTTCTCAGCTAAAGCAAAAGCT
TCTTCTGCAACTTTCCAGTATTCTGCAACTGCAAAAACAGCAGAAGATCG
TGTGAGCATCATAGAAGGACACCTATGTGCTTCTACTGAAGCTTCAGCAG
GGAAAATATCTCAAATCCCTACAAGAACTCGACTACCAATTACAACACAT
GTCTTGGATGTTTCTCAAGGGTCTCCAGCTGCGGGTGTTGAGGTACGTTT
GGAAATGTGGAAGGGCATCCAACCACATCCCCTCTTTGGCGAAANNNNNG
TCAGTGGGTGGGTGTAC
back to top