CK933485

Overview
NameCK933485
Unique NameCK933485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933485_ssr184 microsatellite CK933485_ssr184:184..204. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1577 contig Csv1_Contig1577:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 7.047e-91
Identity = 167/205 (81.46%), Postives = 181/205 (88.29%), Query Frame = 3
Query:  270 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV-LDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            WE  KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS +  G+  LDDK+LDQFMTHYVLLL SFKEQLQQHVRV AMEAVMACW+LEQSLQSLTGV+PGEGTGATMS          TNF DG  DGPDSMGFGPLVPTESERSLMERVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS
Sbjct:  158 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQPPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEGTGATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 362          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.375e-86
Identity = 160/209 (76.56%), Postives = 178/209 (85.17%), Query Frame = 3
Query:  255 GRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            G   +W+  + KAEI+ HPLYE LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA+ NG V DDKELDQFM +YVLLL SFKEQLQQHVRV AMEAVMACW++EQSLQSLTGVSPGEGT ATMS           N FD  ++G DSMGFGPL+PTESERSLMERVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS
Sbjct:  157 GGVMNWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGMVGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 365          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 3.745e-84
Identity = 161/210 (76.67%), Postives = 177/210 (84.29%), Query Frame = 3
Query:  261 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL---DDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS +   + L   DDKELD FMTHYVLLL SFKEQLQQHVRV AMEAVMACW++EQSLQS TGVSPGEGTGATMS           + FDGSLDG   +GFGPLVPTESERSLMERVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS
Sbjct:  115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 321          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.891e-84
Identity = 161/207 (77.78%), Postives = 175/207 (84.54%), Query Frame = 3
Query:  270 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV---ANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+   A G V DDKELDQFMTHYVLLL SFKEQLQQHVRV AMEAVMACW++EQSLQSLTGVSPGEG GATMS           N FDG L   D +GFGPL+PTESERSLMERVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS
Sbjct:  154 WQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 357          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 2.055e-82
Identity = 157/210 (74.76%), Postives = 176/210 (83.81%), Query Frame = 3
Query:  255 GRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-KELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            G   + +  +CKAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+A     DD +ELDQFMTHYVLLL SFKEQLQQHVRV AMEAVMACW+LEQ+LQSLTG SPGEGTGATMS           N +D SLDG D+MGFG  +PTESERSLMERVR ELKHELKQGYKEK++DIREEILRKRRAGKLPGDTTS
Sbjct:   98 GGGGEADAARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDDGRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTS 305          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.863e-75
Identity = 146/208 (70.19%), Postives = 166/208 (79.81%), Query Frame = 3
Query:  264 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXX-TNFFDGSLDGPDS-MGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            EDW +   KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+   V AKYS +  G V+D+KELD FM+HYV+LL SFKEQLQ HV V AMEA+ ACW++EQSLQSLTGVSP E  G TMS            N FDGSLDG D  MGFGPLVPTE ERSLMERV+ ELKHELKQG+KEKIVDIREEI+RKRRAGKLPGDTTS
Sbjct:  111 EDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL--GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTS 316          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.476e-72
Identity = 142/199 (71.36%), Postives = 158/199 (79.40%), Query Frame = 3
Query:  288 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLS-RSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            KA +  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++ R   + A  +A A G     +ELD FMTHYVLLL SFKEQLQQHVRV AMEAVM CW+LEQSLQSLTG SPGEGTGATMS           N FDG+ DG D MGFGPL+ TE ERSL+ERVRHELK+ELKQGYKEK+VDIREEILRKRRAGKLPGDT S
Sbjct:   43 KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSDDEDNQVDSEANMFDGN-DGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTAS 240          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 1.058e-70
Identity = 143/214 (66.82%), Postives = 161/214 (75.23%), Query Frame = 3
Query:  255 GRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA-----NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            G    WE  + KA I  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++     LA  +A A      G     +ELD FMTHYVLLL SFKEQLQQHVRV AMEAVMACW+LEQ+LQSLTG SP EG+GATMS          +N FDG+ DG D MGFGPL+ TE ERSL+ERVR ELKHELKQGY+EK+VDIREEILRKRRAGKLPGDT S
Sbjct:   39 GGGGGWE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAAAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSESNMFDGN-DGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTAS 249          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.612e-61
Identity = 123/200 (61.50%), Postives = 150/200 (75.00%), Query Frame = 3
Query:  288 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDG--SLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            K EI  HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D  ELD F+  YV++L SFKEQLQQHVRV A+EAVMAC ++E +L SLTG + GEG+GATMS          ++   G     G D  GFGPL+PTESERSLMERVR ELK ELKQG+K +I D+REEI+RKRRAGKLPGDTT+
Sbjct:   30 KGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTT 229          
BLAST of CK933485 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.693e-60
Identity = 126/209 (60.29%), Postives = 150/209 (71.77%), Query Frame = 3
Query:  261 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL--DDKELDQFMTHYVLLLYSFKEQLQQHVRVRAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS 881
            AE  E    K EI  HPL EQL++AHV CLR+ATP+D LP IDAQL++S  +L  Y+A     +   D +ELD F+  Y++LL SF+EQLQQHVRV A+EAVMAC ++EQSLQ LTG +  EGTGATMS              D   DG D MGFGPL+PT+SERSLMERVR ELK ELKQG+K +I D+REEILRKRRAGKLPGDTT+
Sbjct:   45 AEAEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTT 253          
The following BLAST results are available for this feature:
BLAST of CK933485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
LET12_SOLLC7.047e-9181.46Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNAP3_MALDO1.375e-8676.56Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT4_ARATH3.745e-8476.67Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNAT3_ARATH4.891e-8477.78Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNOSD_ORYSJ2.055e-8274.76Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT5_ARATH1.863e-7570.19Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOS2_ORYSJ1.476e-7271.36Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNOSB_ORYSJ1.058e-7066.82Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNAT7_ARATH2.612e-6161.50Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
KNOS3_ORYSJ1.693e-6060.29Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_A02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933485 ID=CK933485; Name=CK933485; organism=Citrus sinensis; type=EST; length=883bp
GGGGCTTCTTAGCTCTTGGCCTCTTGCATGTGAAGAGCAAAAGCAAAAAC
GAAAGTAGGTAACAACAAATGGCTTATAACGACCAACAAAACATGCAAAG
GCTCGTCCTTCCGACGACGTCGACCAACCCGCCACCACCAACCTGGCTGA
ACAACGCCGTCCGCCACCATCACCACCAAAACAACGACGACGACGACGAC
GACGAAGAAGAAGCTCCAAAAAACAACAAGAACAACAGTGCAAGTAACGA
CAACGGCAGAGCGGAGGATTGGGAGACTGTAAAATGTAAAGCAGAGATAG
TGGGACACCCATTGTACGAGCAACTGCTGTCGGCACACGTGTCCTGTTTA
AGGATCGCCACCCCAGTTGACCAGTTGCCAAAGATTGATGCTCAGTTGTC
TCGGTCGCGGGATGTCTTGGCTAAGTACTCCGCTGTCGCCAATGGACGCG
TGCTCGATGATAAAGAGCTCGATCAATTCATGACGCATTATGTTCTTTTG
CTCTATTCCTTTAAAGAACAATTGCAACAACATGTCCGGGTTCGTGCAAT
GGAAGCGGTAATGGCATGTTGGGATCTTGAGCAATCTTTACAAAGCTTAA
CTGGTGTATCTCCTGGTGAAGGCACAGGTGCAACAATGTCCGATGATGAT
GAAGACCAGGTAGACAGTGACACAAACTTTTTTGATGGAAGTCTGGATGG
ACCCGATAGCATGGGATTTGGTCCTCTTGTTCCAACTGAAAGTGAGAGGT
CCTTGATGGAGCGTGTTAGGCACGAACTGAAGCATGAGCTGAAACAGGGT
TACAAGGAGAAGATTGTTGACATTAGGGAAGAAATTCTGCGTAAGAGAAG
GGCTGGAAAATTGCCAGGTGACACCACCTCACT
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