CK933486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 2.141e-46 Identity = 100/239 (41.84%), Postives = 143/239 (59.83%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSWGRN 718 EF S A + S + +P T+ F+LNWA+ G ++ S+ SIFVGDL+P+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G C RP+R+ +ATPK S + ++ P + Q ++ N+T+FVG L VS+E+L+ F FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG +G + LSWGRN Sbjct: 140 EFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.812e-45 Identity = 102/240 (42.50%), Postives = 136/240 (56.67%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSWGRN 718 +F S AAAE+ L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF S YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK + AL + SN Q S + N T+FVG L S++S++DL+ F FG IL++KIP GKGCGFVQ++ + AE A+ +QG +G + L+WG N Sbjct: 134 QFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRAS---IAADSALGIVPTSTSNRQPNQDLCS-MDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 7.632e-36 Identity = 98/272 (36.03%), Postives = 148/272 (54.41%), Query Frame = 2 Query: 14 SRAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSD-----RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK-----------KASGXXXXXXXXALVLAGGPG--SNGARVQGSQSDGES------------------NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSWGRN 718 S AA +L++ G L+PN ++ +LNWAT S S+ ++ ++ SIFVGDLAP+VT+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A++EM GV+ + R +++ + + ++S + L+ G SNG G + + S NN T+F+G L S V++++LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG I V LSWGR+ Sbjct: 116 STHAANALLKN--GMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.702e-24 Identity = 76/296 (25.68%), Postives = 132/296 (44.59%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSWGRNP----------------------GNKQWRGDH-SNHWNGAHYGGQGYSGNGYAFRPNQ 823 EFY A L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K + + R + + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A A+ + GT I V WG+ GN Q G + +N W YG G N F +Q Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE----------TNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQ 352
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.702e-24 Identity = 76/296 (25.68%), Postives = 132/296 (44.59%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSWGRNP----------------------GNKQWRGDH-SNHWNGAHYGGQGYSGNGYAFRPNQ 823 EFY A L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K + + R + + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A A+ + GT I V WG+ GN Q G + +N W YG G N F +Q Sbjct: 54 EFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN----------NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQ 335
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22 Identity = 80/308 (25.97%), Postives = 143/308 (46.43%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQ--SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI---------GKQTVHL-----------------SWGRNPGNKQWRGDH-SNHWNGAHYG--GQGYSGNGY 805 EF+ A L + +G + + ++NWAT S ++ + S + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K + SN ++ + S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F++ + A A+ + GT I GK+T+ + WG+ GN Q G + N W YG GQ +S G+ Sbjct: 52 EFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQWGQWYGNAQQIGQYVPNGWQVPAYGVYGQPWSQQGF 344 HSP 2 Score: 74.7146 bits (182), Expect = 6.951e-13 Identity = 53/194 (27.32%), Postives = 93/194 (47.94%), Query Frame = 2 Query: 146 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSW 709 +++VG+L+ DVT++++ + FS P K K+I+D T Y FV F + + A+ MNG + ++++ AT + S Q SQ ++ +FVG L +++ ED++ F+ FG I ++ KG GFV F N+ DAE A+Q++ G +G + + +W Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDT------------SSSTVVSTQRSQ-----DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21 Identity = 79/312 (25.32%), Postives = 142/312 (45.51%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGES--NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI---------GKQTVHL-----------------SWGRNPGNKQWRGDH-SNHWNGAHYGGQGYSGNGYAFRPNQ 823 EF+ A L + +G + + ++NWAT S ++ + S + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K + SN ++ + +S +N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + GT I GK+T+ + WG+ GN Q G + N W YG G + N F Q Sbjct: 52 EFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQ 348 HSP 2 Score: 74.7146 bits (182), Expect = 6.951e-13 Identity = 53/194 (27.32%), Postives = 93/194 (47.94%), Query Frame = 2 Query: 146 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVHLSW 709 +++VG+L+ DVT++++ + FS P K K+I+D T Y FV F + + A+ MNG + ++++ AT + S Q SQ ++ +FVG L +++ ED++ F+ FG I ++ KG GFV F N+ DAE A+Q++ G +G + + +W Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDT------------SSSTVVSTQRSQ-----DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.397e-21 Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 385 EF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK Sbjct: 51 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.825e-21 Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 385 EF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK Sbjct: 51 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
BLAST of CK933486 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21 Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 2 Query: 5 EFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 385 EF A AEK L +G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK Sbjct: 51 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176 The following BLAST results are available for this feature:
BLAST of CK933486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933486 ID=CK933486; Name=CK933486; organism=Citrus sinensis; type=EST; length=825bpback to top |