CK933518

Overview
NameCK933518
Unique NameCK933518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO1_MOUSE (Protein strawberry notch homolog 1 OS=Mus musculus GN=Sbno1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 79/254 (31.10%), Postives = 126/254 (49.61%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMHG------PKCKLANYCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDLA 746
            QN LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++WE A+    E     L  P+DGFY S +    ++  IL  E      ++ I RP  G+ L+    A+LK KY+K+ S + A   W D+Y  S+  C H        K  L   C +G R +   VL G +L VW  +E  L+     ++ ++++VRL  T D +RIVGL++P   V  ++  L+
Sbjct: 1115 QNALFQYFADTLTAVVQNAKKSGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVS-DDALVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLA-SVSGTNVKMQIVRLR-TEDGQRIVGLIIPANCVSPLVNLLS 1360          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO1_HUMAN (Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 78/254 (30.71%), Postives = 126/254 (49.61%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMHG------PKCKLANYCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDLA 746
            QN LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++WE A+    E     L  P+DGFY S +    ++  IL  E      ++ + RP  G+ L+    A+LK KY+K+ S + A   W D+Y  S+  C H        K  L   C +G R +   VL G +L VW  +E  L+     ++ ++++VRL  T D +RIVGL++P   V  ++  L+
Sbjct: 1118 QNALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLVYRPNTGKQLKLEIYADLKKKYKKVVS-DDALMHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLA-SVSGTNVKMQIVRLR-TEDGQRIVGLIIPANCVSPLVNLLS 1363          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO1_RAT (Protein strawberry notch homolog 1 OS=Rattus norvegicus GN=Sbno1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.154e-24
Identity = 78/254 (30.71%), Postives = 126/254 (49.61%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANI--IELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMHG------PKCKLANYCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDLA 746
            QN LF+ F   L  +VQNA+  G  D GI+D+ +    +      K +     +     L+T +++RG++W+ A+    E     L  P+DGFY S +    ++  IL  E      ++ I RP  G+ L+    A+LK KY+K+ S + A   W D+Y  S+  C H        K  L   C +G R +   VL G +L VW  +E  L+     ++ ++++VRL  T D +RIVGL++P   V  ++  L+
Sbjct:  994 QNALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWDEATKIWAE-----LTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVS-DDALVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLA-SVSGTNVKMQIVRLR-TEDGQRIVGLIIPANCVSPLVNLLS 1239          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO_DROME (Protein strawberry notch OS=Drosophila melanogaster GN=sno PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.561e-23
Identity = 85/279 (30.47%), Postives = 139/279 (49.82%), Query Frame = 3
Query:    6 IQNRLFELFISILDLLVQNARIEGNLDSGIVDMKA---NIIELQGTPKTVHVDNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILA--FESTAASG----------------------MYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMHG---PKCK---LANYCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDL 743
            +QNRLF+ F   +  ++Q A+  G  D GI+D+ A   N+  ++   + V       A T + T  ++RG+ W+ A  K  +     L + N+GFY S +    +R  I+    ES  +S                       M +I RP  G  +R   L EL+ KYRK++S E+A   W ++Y+ S   C H      C+   L N C VG R +  +VL G +L VWG +E  L+    +S+ +++V+R++TT + ++IVG L+P +  E ++ DL
Sbjct: 1554 LQNRLFKYFTDTMTAIIQQAKRGGRFDLGILDLGAAGENVTRVR-LIRFVRKHATGVAPTEMHTVRVERGMIWQEAIDKYAD-----LFNENEGFYLSHQLRNQKRTAIMVVILESRNSSSTSSTTDLDSGSKKKKTHSKKEIMCQIYRPNTGLQVRHESLFELEKKYRKVAS-EEAEPHWTEQYDASVNTCSHAYWNGNCRNVSLGNDCEVGLRQRLYHVLAGSVLSVWGRVEHILN---TRSNSKMQVIRMKTT-EGEKIVGTLIPKSCFEPLVADL 1821          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO2_MOUSE (Protein strawberry notch homolog 2 OS=Mus musculus GN=Sbno2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.560e-22
Identity = 76/254 (29.92%), Postives = 124/254 (48.82%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANIIELQGTPKTVHV---DNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMH---GPKCKL---ANYCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDL 743
            QN LF+ F    D L++  + EG  D GI+D+   I E+    + V +       G        ++DRG+ WE A T+  E     L  P DGFY S +    +   +LA ++      + + +P +G   +   L  L  K+ +++ +E+AR  WE  Y +S + C H     +C+L      C  G R++   +L G +L VWG I   ++  +  S+  L++VRL+ T D K+ VG+ +P   V  VLQ+L
Sbjct:  974 QNALFQYFSDTFDHLIEIDKKEGRYDMGILDLAPGINEIHEESQQVFLAPGHPQDGQVVFYKQISVDRGMKWEEALTRSLE-----LKGPYDGFYLSYKVRGSKMSCLLAEQNRGE--YFTVYKPNIGRQSQLETLDSLCRKFHRVT-VEEAREPWESSYALSLEHCSHTTWNQRCRLTQEGKCCAQGLRLRHHYMLCGALLRVWGRIAAVMADVSSSSY--LQIVRLK-TKDKKKQVGIKIPEGCVHRVLQEL 1216          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO2_HUMAN (Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.119e-21
Identity = 74/253 (29.25%), Postives = 124/253 (49.01%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANIIELQGTPKTVHV--DNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMHGP---KCKLANY---CTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDL 743
            QN LF+ F    D L++  + EG  D GI+D+   I E+    + V +   +      + +  ++DRG+ WE A  K        L  P DGFY S +    +   +LA ++      + + +P +G   +   L  L+ K+ ++++ E+A+  WE  Y +S   C H      C+LA     C  G R++   +L G +L VWG I   ++  +  S+  L++VRL+T  D K+ VG+ +P   V  VLQ+L
Sbjct:  980 QNALFQYFSDTFDHLIEMDKREGKYDMGILDLAPGIEEIYEESQQVFLAPGHPQDGQVVFYKISVDRGLKWEDAFAK-----SLALTGPYDGFYLSYKVRGNKPSCLLAEQNRGQ--FFTVYKPNIGRQSQLEALDSLRRKFHRVTA-EEAKEPWESGYALSLTHCSHSAWNRHCRLAQEGKDCLQGLRLRHHYMLCGALLRVWGRIAAVMADVSSSSY--LQIVRLKTK-DRKKQVGIKIPEGCVRRVLQEL 1221          
BLAST of CK933518 vs. ExPASy Swiss-Prot
Match: SBNO2_BOVIN (Protein strawberry notch homolog 2 OS=Bos taurus GN=SBNO2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 73/253 (28.85%), Postives = 122/253 (48.22%), Query Frame = 3
Query:    9 QNRLFELFISILDLLVQNARIEGNLDSGIVDMKANIIELQGTPKTVHV--DNMSGASTMLFTFTLDRGITWESASTKLDEKQKDGLGSPNDGFYESKREWLGRRHFILAFESTAASGMYKIVRPAVGESLREMPLAELKNKYRKLSSIEKARSGWEDEYEVSSKQCMH---GPKCKLANY---CTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTADNKRIVGLLVPNAAVETVLQDL 743
            QN LF+ F    D L+   + EG  D GI+D+   I E+    + V +   +      + +  ++DRG+ WE A  +  E     L   +DGFY S +    +   +LA ++     ++ + +P +G   +   L  L  ++R++++ E+AR  WE  Y  S   C H      C+L      C  G R++   +L G +L VWG I   ++     S+  L++VRL+T  D K+ VG+ +P   V  VLQ+L
Sbjct:  987 QNALFQYFSDTFDHLIAADKREGKYDMGILDLAPGIDEIYEESQQVFLAPGHPQDGQVVFYKISVDRGLKWEEAYARSLE-----LTGTHDGFYLSYKVRGNKPSCLLAQQNRGK--LFTVYKPNIGRQSQLESLDSLSRRFRRVTA-EEAREPWESSYTFSLTHCSHTTWNRHCRLVQEGKDCAQGLRLRHHYMLCGALLRVWGRIAAVMADVTSSSY--LQIVRLKTK-DKKKQVGIKIPEVCVRRVLQEL 1228          
The following BLAST results are available for this feature:
BLAST of CK933518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SBNO1_MOUSE4.109e-2431.10Protein strawberry notch homolog 1 OS=Mus musculus... [more]
SBNO1_HUMAN4.109e-2430.71Protein strawberry notch homolog 1 OS=Homo sapiens... [more]
SBNO1_RAT9.154e-2430.71Protein strawberry notch homolog 1 OS=Rattus norve... [more]
SBNO_DROME1.561e-2330.47Protein strawberry notch OS=Drosophila melanogaste... [more]
SBNO2_MOUSE6.560e-2229.92Protein strawberry notch homolog 2 OS=Mus musculus... [more]
SBNO2_HUMAN1.119e-2129.25Protein strawberry notch homolog 2 OS=Homo sapiens... [more]
SBNO2_BOVIN9.473e-2128.85Protein strawberry notch homolog 2 OS=Bos taurus G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004284_E08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IIIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933518 ID=CK933518; Name=CK933518; organism=Citrus sinensis; type=EST; length=852bp
GGGGTATTCAGAATAGACTATTTGAGTTGTTCATCAGCATCTTGGATCTT
CTTGTTCAGAATGCACGTATAGAAGGAAATCTTGATTCGGGGATTGTTGA
TATGAAAGCTAACATTATTGAACTGCAAGGAACTCCAAAGACTGTTCATG
TTGATAACATGTCTGGGGCGTCGACTATGCTCTTTACTTTCACTCTGGAT
CGTGGAATCACATGGGAGTCTGCTAGTACTAAGCTAGACGAGAAGCAAAA
GGATGGGCTTGGTTCACCTAATGATGGATTCTATGAATCTAAGAGAGAAT
GGTTGGGAAGGCGTCACTTCATTTTAGCATTTGAGAGTACTGCAGCTTCT
GGAATGTATAAAATTGTCCGTCCTGCTGTAGGGGAGTCCCTGAGGGAAAT
GCCTTTGGCAGAATTGAAAAATAAATACAGGAAATTGTCATCAATAGAGA
AGGCTCGCTCTGGTTGGGAAGACGAATATGAAGTTTCATCTAAACAGTGT
ATGCATGGCCCCAAATGTAAGCTTGCCAACTACTGCACAGTAGGCCGAAG
AATACAAGAAGTAAATGTTTTGGGTGGCCTCATTCTTCCTGTTTGGGGCA
CTATTGAGAAGGCCCTTTCTAAGCAGGCTCGCCAAAGCCATAAACGGCTC
CGGGTTGTCCGTCTAGAAACCACTGCAGATAATAAGCGAATTGTTGGGCT
TTTGGTCCCAAATGCAGCAGTTGAGACAGTGCTACAAGATTTGGCATGGG
TTCAAGATATCGATGATTGAGATGCAGTTCTGGTATTTTTGCATGTAACA
GCCATGTAACTGCCGTAAAATTAAGAAACCAGCACAGGCCTTGCCCTTGA
GG
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