CK933536

Overview
NameCK933536
Unique NameCK933536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933536 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 64/165 (38.79%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  202 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCDVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTXXKNC 696
            GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q  QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +M L+  H C+E     +CP+C E +  +R    VLPCGH   + C
Sbjct:   19 GCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTC 172          
BLAST of CK933536 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 62/165 (37.58%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  202 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCDVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTXXKNC 696
            GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q  QQ C +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +  L+  H C+E     +CP+C E +  +R    VLPCGH   + C
Sbjct:   19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTC 172          
BLAST of CK933536 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  145 ESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCDVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXX--NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTXXKNC 696
            E T ++   E+L       GC HY R C+++   C+E + CRHCHN+A +         H + R  V  ++C +C   Q   Q C  C  CMG Y+C  CKL+DDD +K  YH               ++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H   + C
Sbjct:  129 EKTYYDKEQEIL-------GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRC 298          
The following BLAST results are available for this feature:
BLAST of CK933536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN1.221e-3338.79RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE1.034e-3237.58RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO1.034e-3234.41Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004284_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933536 ID=CK933536; Name=CK933536; organism=Citrus sinensis; type=EST; length=704bp
GGGGTAGTTGCTATGGCAGGATTGGAAGTCCATCATTCCAGCCATCAACA
ATTTGAGCCAATGAGTACATCGTGCAAAGCAGATGAAATTTTTTCTACAC
CCTCATACTCTCATCTGGCAGATAGAGAGTTTTTGGTAACCGAAGAATCA
ACTAATCATAACGGTTCGACCGAATTGCTGAGGAAAGGATTCATGGAGTA
TGGATGCCAGCACTATCGAAGACGGTGCCGCATTAGAGCTCCCTGTTGCA
ATGAGATCTTTGATTGTCGTCACTGTCATAACGAGGCAATGAATAATATT
AATGTTGATCAGAAGCTTAGGCATGACATTCCGCGGCATGAAGTCAACCA
GGTGATATGTTCGCTCTGTGGCACTGAACAAAAGGTTCAGCAAGTTTGTG
TTAATTGTGATGTATGCATGGGTGAATACTTCTGCGAGAGTTGCAAGCTG
TTTGATGATGATACATCCAAGAAGCAATATCATTGTGATGGATGTGGAAT
ATGCAGGATTGGTGGATGTGATAATTTCTTCCATTGCAACAAGTGTAGAT
GCTGCTACTCAATGCTTTTGAAGAACAGCCACCCATGTGTAGAAGGTGCA
ATGCATCATGACTGCCCTGTCTGCTGTGAGTATTTATTCGAGACAAGACA
GGATGTAATTGTCTTGCCGTGTGGGCATACCNNNNANAAAAATTGCTTGA
AGGA
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