CK933762

Overview
NameCK933762
Unique NameCK933762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSV DL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.124e-28
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSV DL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.866e-26
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V +L
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.414e-24
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V DL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.575e-23
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V +L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.575e-23
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V +L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 1.575e-23
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V +L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV 258
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAV 66          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.129e-21
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V +L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CK933762 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.129e-21
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   61 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV*DL 267
            MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V +L
Sbjct:    1 MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of CK933762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARATH1.737e-3092.7560S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC2.124e-2888.4160S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE9.866e-2681.1660S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_MOUSE5.414e-2476.8160S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_RAT1.575e-2375.3660S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN1.575e-2375.3660S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN1.575e-2375.3660S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA2.687e-2377.2760S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_ORNPR1.129e-2174.2960S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_IXOSC1.129e-2174.2960S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004280_F06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933762 ID=CK933762; Name=CK933762; organism=Citrus sinensis; type=EST; length=494bp
GGGGGCTTGGGGGCGTGCTTAAATTCGAAAACTCGAGTGAAACAAAAACC
TCGACCGAGAATGCCTAAGCAGATACACGAGATCAAGGATTTCCTTCTTA
CCGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAGAGAAGCAGAGAT
GTTGTCAAGTTCAAGGTTCGCTGCTCTAAGTACCTTTACACCCTTTGTGT
GTTCGACTCAGAGAAGGCTGACAAGTTGAAGCAGTCTCTTCCTCCAGGTT
TGAGCGTCTAAGACCTGTGAGTGTATGCGAGCTTGTCTTAATTTACTAGG
TGATGAGAGCTGCTTTTTTACATTTCATGCTGTTTTCTCATAGTAGAAAT
ATTGTGTGGATTTGAGCGTATTTGATAATTGTTATTGTTAGAGGATGCGG
ATCTTTTTGCCAGTTGATTTATGGACGTTGAAACTTGGTTTGCACAATTG
CAACTTTTTGCCTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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