CK933815

Overview
NameCK933815
Unique NameCK933815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.739e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  148 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 558
            ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  148 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 558
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  148 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 558
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  151 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 558
            +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L           T    P    E+   LA     F CG++ GAL  LG    V+A +++LPAC F V I+
Sbjct:   37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  151 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 558
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L R+               A+       A   + F CG++RG LS LG+   V+A ++ LPAC F V I+
Sbjct:   37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  151 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 555
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F+KQ+D+L+TNH+GT+VLQDN F  L                P A+       A   + F CG++RGAL  LGI   V+A ++ LP C F V I
Sbjct:   37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 1
Query:   70 VDSLLTEIVSTYNNRFYANKPELAARR--------IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 552
            +D LL E+V T        K + ++ +        +E+IG+QVG +++ER  + R R ++  + ++F+C++ W  +F+K +DNLKTN RG FVL D  F W ++++     E              A + T + YFP G IRG +   G    V A   NLP C F V+
Sbjct:    8 LDFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163          
BLAST of CK933815 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 48/125 (38.40%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  133 ELAARRIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 492
            E    R+  IG+Q+G +LSE            +  D L  +KFIC+D W ++F KQIDNLKTNHRGTF L D  +R +   S +   +N E             +    +  P GIIRG LS+LG
Sbjct:  117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230          
The following BLAST results are available for this feature:
BLAST of CK933815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPC6B_MOUSE1.739e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_HUMAN2.271e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_BOVIN2.271e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6A_MOUSE5.990e-2340.44Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_BOVIN6.623e-2239.71Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_HUMAN1.130e-2140.00Trafficking protein particle complex subunit 6A OS... [more]
YA95_SCHPO1.927e-2132.54Uncharacterized protein C13G6.05c OS=Schizosacchar... [more]
TRS33_YEAST1.338e-1438.40Transport protein particle 33 kDa subunit OS=Sacch... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004280_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933815 ID=CK933815; Name=CK933815; organism=Citrus sinensis; type=EST; length=728bp
GCGGGGAGAGTANNNGAATCAGAGAAACAGCAACAGTGAAAAAGGGGGAG
GGAAGNNTCAGAGAGTTGCGTTGACAGCTTGTTAACAGAAATAGTATCCA
CGTATAACAATCGTTTCTACGCCAACAAGCCAGAGCTTGCAGCCCGTCGG
ATCGAGGCGATTGGTTATCAGGTCGGTCACCAGCTCTCCGAACGGTATAC
AATGGAGAGGCCACGCTTTAGTGATCATCTAGAGGCGATAAAGTTCATCT
GCAAGGACTTTTGGTCTGAGCTCTTCAAGAAGCAGATAGACAACTTGAAG
ACGAACCATAGAGGTACCTTTGTATTGCAAGACAATCGGTTTCGATGGCT
TTCACGTATCTCGACTGATCCATCAGTCGAAAATACTGAATCTCAAGATC
CTTCTGCTGCAGCTGAAAGCAAGGCATCCCTAGCAACCATGCACGTGTAC
TTCCCCTGTGGAATTATAAGGGGAGCTCTCTCAAACTTGGGGATTCCTTG
TGCGGTTTCGGCCGACATATCCAATCTTCCTGCATGTTCATTTGTGGTCC
GTATAAAGGCCTGATAAGCATTTTGGCAGACTGTGATTAAGAATGGGGTT
GAAGCATATAGCTAGTTTTGACAGATCTGTACTGGAAAACTATTAATGCC
CAATTGTTGAAAATACCGAAAGTACCATATGAGCCCTTGGGATGAACTCC
TGTTGCTTTGTAGATTTCCGATTATGGA
back to top