CK933825

Overview
NameCK933825
Unique NameCK933825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 72/199 (36.18%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  222 STLQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            S  ++  +E K E+ + +++   +LYV NLP+S + +++  +FA  GTV +VEI+  +   ++R FAF TM S EEA+ A+  FD  +V GR ++V F +   +   +   SA  R T        H LYV+NLSW + S  LR+ F+     +S+KV+++ + GRS G+GF++F++ E   +A+ +++  EL GRPLR
Sbjct:   92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLR 289          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25
Identity = 81/238 (34.03%), Postives = 122/238 (51.26%), Query Frame = 3
Query:  111 SCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTV-ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            S  F  LP     L  S+S+   S  F  R + L     ++D    +   E+ +  +   K++V NLP+S   A +  LF   G V  VE+I  K  G++R F F TM+S EE +AA  QF+  E+ GR +RV        P P++  ++  R         ++ + +YV NL+W V    L   FS     V +KVV++ + GRS G+GFV++++ EE   AI SLDG +L GR +R
Sbjct:   29 SLSFFSLPPSSLNLSLSSSSSCFSSRF-VRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.624e-25
Identity = 81/237 (34.18%), Postives = 118/237 (49.79%), Query Frame = 3
Query:  153 HSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            HS++  P  S +F TR           D  V  +P  ++      KL+V NLP+S   A +  LF   G V  VE+I  K  G++R F F TM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ + +YV NLSW V    L+E FS   N V +KVV++ + GRS G+GFV++++ +E   AI SL+G +L GR +R
Sbjct:   49 HSASIKPFES-SFSTRVALSDFDQLEDDVEVAEQPRFSEDL----KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIR 280          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 3
Query:   84 FLTNHPFSFSCLFPKLPHCIKLLHSSNS-TPSLSYNFPTRNLCLQVCSTLQ-----DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            F  + P S S L P L    KL   S S + +  +N P       V  T +     D   +  P + Q  +   KL+V NLP++   A++  LF   G V  VE+I  K  G++R F F TM+S  E +AA  QF+  E+ GR +RV       K        PR    +S             + + +YV NLSW V    L   FS     V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R
Sbjct:   20 FGVSRPASVSLLSPSLS--FKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIR 276          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            KL+V NLP+S   A +  LF   G V  VE+I  K  G++R F F TM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ + +YV NLSW V    L+E FS   N V +KVV++ + GRS G+GFV++++ +E   AI SL+G +L GR +R
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIR 279          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            K++V NL +S   A +  LF   G V  VE+I  K  G++R F F TM+S EE +AA  QF+  E+ GR +RV        P P++  ++  RE               + + +YV NL+W V    L   FS     V +KVV++ + GRS G+GFV++++ EE   AI SLDG +L GR +R
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 64/189 (33.86%), Postives = 107/189 (56.61%), Query Frame = 3
Query:  234 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            +   + + E+ Q+     KL+V NLP+      +  LF   G V   E+I ++   ++R F F TM++ EEA+ AV  ++  +V+GR++ V  A + +  RP+R    P R  E  + +YV N+ W +    L + FS +   VS++VV++   GRS G+GFV+ A++ E   AI++LDG+ L GR +R
Sbjct:  119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  258 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            E+ Q+ +   KL+V NLP+      +  LF   G V   E+I ++   ++R F F TM++ EEA  AV  +   +++GR++ V  A     PR  R   AP   +  + +YV N+ W +    L + FS +   VS++VVF+   GRS G+GFV+ +++ E   AI++LDG+ L GR +R
Sbjct:   88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22
Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            KL+V NL +  +   +  LF   GTV   E+I ++   ++R F F TM+S +EA+ AV +F+  +++GR++ V  A     PR  R   AP   E    +YV NL W V +  L + FS +   V ++VV++   GRS G+GFV+ +  +E   AIS+LDG+ L GR +R
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316          
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.321e-20
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791
            KL+V NLP+     ++  +F   G V   E+I ++   ++R F F TM++ EEA+ AV   +  ++ GR + V   K   +  P+R+      E    +YV NL W V ++ L + FS +   VS++VV +   GRS G+GFV+ +++ E   AI++LDG+ L GR +R
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVR 221          
The following BLAST results are available for this feature:
BLAST of CK933825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ROC5_NICSY2.891e-2936.1833 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY2.533e-2534.0329 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICPL9.624e-2534.1831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH1.642e-2432.43Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICSY2.144e-2436.9829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_NICPL1.064e-2336.9630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY1.390e-2333.8631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY6.897e-2334.4428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.536e-2237.0631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL9.321e-2034.3228 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004278_H07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933825 ID=CK933825; Name=CK933825; organism=Citrus sinensis; type=EST; length=792bp
GAGGGTCTTACATTTTGTTCAGCGTTATCTTCCTCTCACTCAAACGAACC
ATGGCAGCGTTAGAAGCAGCAGCAACGTCAATCTTCTTAACCAACCACCC
TTTTTCGTTTTCGTGCTTATTTCCCAAACTACCGCACTGTATAAAGCTCC
TCCATTCTTCCAATTCTACTCCTTCACTTAGCTATAATTTTCCAACACGA
AATCTTTGCCTTCAAGTATGCTCAACTTTGCAAGACACAACAGTAGAAAC
AAAACCAGAACAAACACAGAAACAGAATATAAGGAGAAAGCTATATGTGT
TTAATTTGCCTTGGTCTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCC
CCATGTGGAACTGTTGTAGATGTTGAGATTATAAAGCACAAAGGTGGGAA
AAACAGAAACTTTGCATTTGCGACAATGGCTTCGCCGGAAGAAGCTCAGG
CTGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAGGATTATAAGG
GTTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAACGTTCTGCAAG
TGCCCCTGCTAGAGAAACACAACATAATCTTTATGTGTCGAATCTTTCTT
GGAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGCTAATTTTAAT
CCTGTTTCCTCCAAGGTTGTTTTTGAGAGCAATAAAGGAAGATCAGCTGG
TTATGGCTTTGTCTCATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTT
CTTCTTTGGATGGCAAGGAGTTGATGGGGCGACCACTTCGTT
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