CK933825
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29 Identity = 72/199 (36.18%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 222 STLQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 S ++ +E K E+ + +++ +LYV NLP+S + +++ +FA GTV +VEI+ + ++R FAF TM S EEA+ A+ FD +V GR ++V F + + + SA R T H LYV+NLSW + S LR+ F+ +S+KV+++ + GRS G+GF++F++ E +A+ +++ EL GRPLR Sbjct: 92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLR 289
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25 Identity = 81/238 (34.03%), Postives = 122/238 (51.26%), Query Frame = 3 Query: 111 SCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTV-ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 S F LP L S+S+ S F R + L ++D + E+ + + K++V NLP+S A + LF G V VE+I K G++R F F TM+S EE +AA QF+ E+ GR +RV P P++ ++ R ++ + +YV NL+W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R Sbjct: 29 SLSFFSLPPSSLNLSLSSSSSCFSSRF-VRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.624e-25 Identity = 81/237 (34.18%), Postives = 118/237 (49.79%), Query Frame = 3 Query: 153 HSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 HS++ P S +F TR D V +P ++ KL+V NLP+S A + LF G V VE+I K G++R F F TM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ + +YV NLSW V L+E FS N V +KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R Sbjct: 49 HSASIKPFES-SFSTRVALSDFDQLEDDVEVAEQPRFSEDL----KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIR 280
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24 Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 3 Query: 84 FLTNHPFSFSCLFPKLPHCIKLLHSSNS-TPSLSYNFPTRNLCLQVCSTLQ-----DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 F + P S S L P L KL S S + + +N P V T + D + P + Q + KL+V NLP++ A++ LF G V VE+I K G++R F F TM+S E +AA QF+ E+ GR +RV K PR +S + + +YV NLSW V L FS V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R Sbjct: 20 FGVSRPASVSLLSPSLS--FKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIR 276
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24 Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 KL+V NLP+S A + LF G V VE+I K G++R F F TM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ + +YV NLSW V L+E FS N V +KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIR 279
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23 Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 3 Query: 288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 K++V NL +S A + LF G V VE+I K G++R F F TM+S EE +AA QF+ E+ GR +RV P P++ ++ RE + + +YV NL+W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23 Identity = 64/189 (33.86%), Postives = 107/189 (56.61%), Query Frame = 3 Query: 234 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 + + + E+ Q+ KL+V NLP+ + LF G V E+I ++ ++R F F TM++ EEA+ AV ++ +V+GR++ V A + + RP+R P R E + +YV N+ W + L + FS + VS++VV++ GRS G+GFV+ A++ E AI++LDG+ L GR +R Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23 Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 3 Query: 258 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 E+ Q+ + KL+V NLP+ + LF G V E+I ++ ++R F F TM++ EEA AV + +++GR++ V A PR R AP + + +YV N+ W + L + FS + VS++VVF+ GRS G+GFV+ +++ E AI++LDG+ L GR +R Sbjct: 88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22 Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 3 Query: 288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 KL+V NL + + + LF GTV E+I ++ ++R F F TM+S +EA+ AV +F+ +++GR++ V A PR R AP E +YV NL W V + L + FS + V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
BLAST of CK933825 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.321e-20 Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3 Query: 288 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFATMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHNLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNKGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 791 KL+V NLP+ ++ +F G V E+I ++ ++R F F TM++ EEA+ AV + ++ GR + V K + P+R+ E +YV NL W V ++ L + FS + VS++VV + GRS G+GFV+ +++ E AI++LDG+ L GR +R Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVR 221 The following BLAST results are available for this feature:
BLAST of CK933825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933825 ID=CK933825; Name=CK933825; organism=Citrus sinensis; type=EST; length=792bpback to top |