CK933838

Overview
NameCK933838
Unique NameCK933838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 8.085e-87
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 8.085e-87
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 8.085e-87
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.379e-86
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.379e-86
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 2.352e-86
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MA+ EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 3.072e-86
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 3.072e-86
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 4.012e-86
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157
[Close]
BLAST of CK933838 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 5.240e-86
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 1 
Query:   31 MADTEDIQPLVCDNGTGMGKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 501
            MAD EDIQPLVCDNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS 157
The following BLAST results are available for this feature:
BLAST of CK933838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
ACT1_SORBI8.085e-8798.73Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ8.085e-8798.73Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI8.085e-8798.73Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT1_TOBAC1.379e-8698.73Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT11_ARATH1.379e-8698.73Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT3_PEA2.352e-8698.09Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT4_ARATH3.072e-8698.09Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT12_ARATH3.072e-8698.09Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT11_SOLTU4.012e-8698.09Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT7_ARATH5.240e-8698.09Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004278_G11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933838 ID=CK933838; Name=CK933838; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTAGAAATTCGAAGTTAGAAAATGGCAGATACTGAGGATAT
TCAGCCTCTTGTTTGTGACAATGGGACTGGAATGGGGAAGGCTGGATTTG
CCGGAGATGATGCTCCGAGAGCTGTGTTCCCCAGCATTGTGGGGCGCCCT
CGCCACACTGGAGTTATGGTTGGTATGGGTCAGAAAGATGCCTATGTTGG
TGATGAGGCTCAATCCAAAAGAGGTATTTTGACTTTGAAATACCCAATCG
AGCATGGCATTGTTAGCAACTGGGACGATATGGAGAAAATCTGGCATCAC
ACATTTTATAATGAGCTTCGTGTGGCTCCGGAAGAGCATCCGGTTCTTCT
CACTGAGGCTCCCCTTAATCCAAAGGCCAATCGTGAGAAGATGACACAGA
TTATGTTTGAGACCTTTAACACCCCTGCTATGTATGTTGCTATCCAGGCT
GTGCTTTCTCTCTATGCTAGCGGTCGTACAACTGGTATTGTTCTGGACTC
T
back to top