CK933876

Overview
NameCK933876
Unique NameCK933876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.659e-46
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDRLKELIKYKGYQVPPAELEALLLTHP+++D AV+PFPD+E GQ+PMAY+VR+ GS LSE EVM+FVA+QVAPYK+VR+VAFV  IPKN SGKILRKDLIKLATSKL
Sbjct:  445 VDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLATSKL 552          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 7.947e-46
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 349
            VDRLKELIKYKGYQV PAELEALLLTHP+I+DAAV+PFPDKE GQ+PMAYVVR+ GS LSE  +M+FVA+QVAPYKR+R+VAFV+SIPKNPSGKILRKDLIK+ATS
Sbjct:  437 VDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIATS 542          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.715e-44
Identity = 85/108 (78.70%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDRLKELIKYKGYQVPPAELEALL+THP I DAAV+PFPDKEAGQYPMAYVVR+  S LSE +V+DF+++QVAPYK++R+V+F+ SIPK  SGK LRKDLIKLATSKL
Sbjct:  443 VDRLKELIKYKGYQVPPAELEALLITHPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLATSKL 550          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 83/108 (76.85%), Postives = 96/108 (88.89%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDRLKELIKYKGYQVPPAELEALL+ HP I DAAV+PFPD+EAGQYPMAYV R+  S LSE EV+DF++ QVAPYK++R+VAF++SIPK  SGK LRKDLIKL+TSKL
Sbjct:  445 VDRLKELIKYKGYQVPPAELEALLIAHPHILDAAVIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTASGKTLRKDLIKLSTSKL 552          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.093e-42
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDRLKELIKYKGYQVPPAELEALLL HP I DAAV+PFPDKEAGQ+PMAYV R+  S L E +V+DF+++QVAPYK++R+VAF+ SIPK PSGK LRKDLIK A SK+
Sbjct:  443 VDRLKELIKYKGYQVPPAELEALLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKTPSGKTLRKDLIKFAISKI 550          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.026e-41
Identity = 80/108 (74.07%), Postives = 96/108 (88.89%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDRLKELIK  GYQV PAELEALLL HP+I+DAAV+P PD +AGQYPMAY+VR+ GS LSE+E+M FVA+QV+PYK++R+V F+ASIPKNPSGKILR++L KL TSKL
Sbjct:  458 VDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRRELTKLTTSKL 565          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.096e-38
Identity = 72/106 (67.92%), Postives = 96/106 (90.57%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 349
            VDRLKELIKYKGYQVPPAELE +L +HP I+DAAV+P+PD+EAG+ PMA++VR+ GS +++ +VMD+VA+QVAPYK+VRRVAFV +IPK+P+GKILR++L++ A S
Sbjct:  431 VDRLKELIKYKGYQVPPAELEHILQSHPGIADAAVIPYPDEEAGELPMAFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTAIPKSPAGKILRRELVQQALS 536          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.347e-36
Identity = 69/104 (66.35%), Postives = 91/104 (87.50%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 343
            VDRLKELIKYK YQVPP ELE +L ++P + DAAVVPFPD++AG+ PMA++VR+ GS L+E +++DFVA+QV PYK+VRRVAF+ +IPKNP+GKILR++L K+A
Sbjct:  451 VDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRRELTKIA 554          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.709e-36
Identity = 75/111 (67.57%), Postives = 96/111 (86.49%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA---TSKL 355
            VDRLKELIKYKGYQVPPAELE +L + P+I+DAAVVP+PD+EAGQ PMA+VVR+ G+ L+E +VM+ VA+ VAPYK+VRRVAFV +IPK+P+GKILR++L+  A   TS+L
Sbjct:  488 VDRLKELIKYKGYQVPPAELEHILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSPAGKILRRELVLQAMASTSRL 598          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.091e-34
Identity = 70/100 (70.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 331
            VDRLKELIKYKG+QV PAELEALLL HP ISDAAVVP  D++AG+ P+A+VVR  GS ++E+EV DF+++QV  YKR++RV FV +IPK+PSGKILRKDL
Sbjct:  433 VDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDL 532          
The following BLAST results are available for this feature:
BLAST of CK933876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
4CLL4_ORYSJ4.659e-4681.484-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CLL5_ARATH7.947e-4683.024-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL4_ARATH9.715e-4478.704-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CLL3_ARATH6.297e-4376.854-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
4CLL8_ARATH9.093e-4275.004-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CLL2_ARATH2.026e-4174.074-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]
4CLL5_ORYSJ2.096e-3867.924-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
4CLL9_ARATH3.347e-3666.354-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CLL6_ORYSJ5.709e-3667.574-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
4CL2_TOBAC4.091e-3470.004-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004278_A02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933876 ID=CK933876; Name=CK933876; organism=Citrus sinensis; type=EST; length=534bp
GGGCATTGATGATGATGGCTTCATTTTTATTGTTGATCGATTAAAGGAGC
TGATCAAGTACAAAGGTTATCAGGTCCCTCCAGCAGAACTAGAGGCTTTG
CTACTAACTCATCCAAAAATTTCTGATGCTGCTGTCGTACCATTTCCTGA
CAAGGAGGCTGGGCAATATCCCATGGCATATGTGGTACGGGAAGCTGGAA
GTCGATTATCAGAGAATGAAGTCATGGATTTTGTAGCAAGACAGGTTGCC
CCATACAAGAGGGTTCGGAGAGTGGCATTTGTAGCTTCAATACCCAAGAA
TCCATCAGGCAAGATTCTCAGGAAGGATCTCATCAAGCTTGCGACATCCA
AACTTTGAATGCCTGGGGCTTTTGCCCAAAGAGAGGGCCTCAAACAGAGA
AGTAGTGGTTCTATTTCTCATTCAACATCTTGTTTATGCCTGTAGCAAAA
TTATGCTGTACTAAAATCCGTTATGCTGGTTTATATATATTTTGCCTTGT
CACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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