CK934571

Overview
NameCK934571
Unique NameCK934571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 92/103 (89.32%), Postives = 94/103 (91.26%), Query Frame = 3
Query:  228 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            +GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 AGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 3
Query:  228 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 AGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 3
Query:  231 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 3
Query:  228 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            S D        S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 3
Query:  228 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            +G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 89/103 (86.41%), Postives = 94/103 (91.26%), Query Frame = 3
Query:  228 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.880e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.880e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  261 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 3
Query:  231 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CK934571 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 3
Query:  231 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARDNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 536
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
The following BLAST results are available for this feature:
BLAST of CK934571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI1.302e-4389.32Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC2.900e-4388.35Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH3.788e-4389.22Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR8.438e-4387.38Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_MEDTR8.438e-4387.38Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH1.439e-4286.41Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN1.880e-4296.74Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B2_SOLLC1.880e-4296.74Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B7_ARATH3.206e-4287.25Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH3.206e-4287.25Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934571 ID=CK934571; Name=CK934571; organism=Citrus sinensis; type=EST; length=704bp
GGGGACAACGCCTAGCTTTACTCTTATCGTTTCGAAGTAAAAGGAAAAGA
AAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAAT
GGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGA
AGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCC
GGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCG
CGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGGACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGAC
CTGA
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