CK934596

Overview
NameCK934596
Unique NameCK934596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934596_ssr564 microsatellite CK934596_ssr564:564..575. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of CK934596 vs. ExPASy Swiss-Prot
Match: SUVR3_ARATH (Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana GN=SUVR3 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 2.462e-51
Identity = 90/205 (43.90%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:  106 NQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIXXXXXXXXXXRQFWASTNAAADAESN---SSLSRLGFDSVSLVXXXXXXXXXXXXXXXXXVGLGDGVFGCPCFSGLEDVGIVXXXXXXXXXXXXXXNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQ 711
            ++FL+ A LILPWL P ELA V+ TC+TLS ISKS+T+ RSLDA+RS+EN  IPFHN+ D   YAYFIYTP QI           RQ+W +      +ES     S+S  G   VSLV                     +G   C  F+G+E+  I               NR+TQ+G+SV LKIVR   KGW LYADQ IKQ +
Sbjct:   26 DRFLRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSIDSQRYAYFIYTPFQI---PASSPPPPRQWWGAAANECGSESRPCFDSVSESGRFGVSLVDESGCECERCE----------EGYCKCLAFAGMEE--IANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQAR 215

HSP 2 Score: 80.4925 bits (197), Expect = 2.462e-51
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  767 KEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDAHRIGNIARFI 925
            K+ARRRQ IYD L S+   +SALLV+REHLPSG+ACLR+NIDA RIGN+ARFI
Sbjct:  212 KQARRRQNIYDKLRSTQSFASALLVVREHLPSGQACLRINIDATRIGNVARFI 264
The following BLAST results are available for this feature:
BLAST of CK934596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SUVR3_ARATH2.462e-5143.90Histone-lysine N-methyltransferase SUVR3 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004229_A12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934596 ID=CK934596; Name=CK934596; organism=Citrus sinensis; type=EST; length=926bp
GGGGAGACGACACAGCATTGAAAACTCGATGGCATTCAGCAAAGCACCGA
GGAGCTGATAAACCGTCACAAAAGAACCATCGAAGTAGATGAAGAACAAA
AGCAGAATCAATTCCTTCAGTGGGCTCGCTTAATACTCCCATGGCTAACC
CCAGGGGAGCTCGCCAACGTATCTCTTACATGCAGAACCCTTTCCCAAAT
CTCCAAATCCATCACTCTCTCCCGCTCTCTCGACGCCTCCAGGTCCGTCG
AGAATTTCCCGATCCCATTTCACAATGCCGCCGACAAAACCCCCTACGCC
TACTTCATTTACACCCCATCACAGATAATCCCTCCTCCTTGTCCTGCCCA
ATTCCCACCACGCCAATTTTGGGCCTCCACCAATGCTGCTGCTGATGCTG
AATCCAACTCTTCTCTGAGTCGACTCGGGTTTGACTCAGTGAGTCTTGTC
TGCGAGTCAGACGAAAGTGAATCTGGGTGCGACTGTGAAGAGTGTTTTGA
GGTGGGACTTGGTGACGGGGTATTTGGGTGTCCGTGTTTTTCGGGTCTGG
AGGATGTGGGCATAGTGAGTGAGTGCGGACCGAGTTGCGGGTGCGGGTCT
GAGTGTGGGAATCGGTTGACTCAGAGAGGAATATCGGTGAGATTGAAGAT
TGTGAGGAGTGTGAATAAAGGGTGGGGTTTATATGCCGATCAATTCATAA
AGCAAGGGCAATTCATCTGTGAGTACGCAGGTATCGGCAAAATGGAAATG
TGAACTTTTGACCACAAAAGAAGCAAGACGGCGGCAACAAATCTATGATG
GACTTGCATCGAGTCCCAGAAATTCCTCTGCTCTTTTGGTCATAAGGGAG
CACCTTCCATCTGGAAAGGCTTGTTTGAGGATGAACATTGATGCCCACAG
AATTGGAAACATTGCTCGATTTATTA
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