CK934597

Overview
NameCK934597
Unique NameCK934597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1764 contig Csv1_Contig1764:65..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.207e-72
Identity = 131/160 (81.88%), Postives = 141/160 (88.12%), Query Frame = 3
Query:  435 QPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLP 914
            +PT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASFNEGEPSTAP LTLTGRKK PD LQTADGWAKF+GGFFF GISGVIWAYFLLYVL+LP
Sbjct:   54 KPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLP 213          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.882e-71
Identity = 132/176 (75.00%), Postives = 146/176 (82.95%), Query Frame = 3
Query:  387 SSYKYTLFK*FDLHFVQPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLP 914
            S  ++T F    +   +PTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAKFTGGFFF G+SGV WA FL+YVL+LP
Sbjct:   37 SPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLP 212          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.927e-70
Identity = 129/158 (81.65%), Postives = 137/158 (86.71%), Query Frame = 3
Query:  441 TYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLP 914
            T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAKFTGGFFF GISGV WAYFLLYVL+LP
Sbjct:   58 TFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLP 215          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.782e-69
Identity = 122/160 (76.25%), Postives = 139/160 (86.88%), Query Frame = 3
Query:  435 QPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLP 914
            +PTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASFNEGEPSTAP LTLTGRKKE D+LQTA+GW++FTGGFFF G+SG +WAYFLLYVL+LP
Sbjct:   46 KPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLP 205          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.350e-31
Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SFN  +                +QLQ+A GW +FT G+    I G  +AY L+
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.130e-31
Identity = 61/150 (40.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++FT GFF   +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.949e-30
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            +QP  GDPF+G L TPI+ S     ++ NLP YR  +SP+LRG+EVG+AHG+ +VGP+ K GPLR++ +            V+I +ICL+ YG+ SF    P  A            D L+T++GW++FTGGFF   + G + A+FLL
Sbjct:   10 VQPYKGDPFVGHLSTPISDSDFTRAFIGNLPIYRPGLSPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVANLGGLISTIALVLIATICLSAYGLVSFQGKSPEGA------------DPLKTSEGWSQFTGGFFIGAMGGAVVAFFLL 145          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.325e-30
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++FT GFF   +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.325e-30
Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLPL 917
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++            ++IL++CL++YG  SF++ +                D LQT +GW +FT GF    + G  +AY LL   N+P+
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIPV 143          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.325e-30
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F+  E +              D+LQTA+GW +   GF    + G  +AY LL
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
The following BLAST results are available for this feature:
BLAST of CK934597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA1.207e-7281.88Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL3.882e-7175.00Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH1.927e-7081.65Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU2.782e-6976.25Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.350e-3144.00Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_THEEB5.130e-3140.67Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_TRIEI1.949e-3042.57Photosystem I reaction center subunit XI OS=Tricho... [more]
PSAL_SYNEN3.325e-3040.00Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_GRATL3.325e-3042.58Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_CYACA3.325e-3041.89Photosystem I reaction center subunit XI OS=Cyanid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934597 ID=CK934597; Name=CK934597; organism=Citrus sinensis; type=EST; length=918bp
NCGGGGAAACAGAAGTCTTTTAACAAACACAANNNCAAATGGCTTCTGTT
TCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTC
CAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTG
TTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAA
AAGGTAACACATTGATGAAATATAAATGTTTATTCGGAATTCATAATCAT
CATCCTTTTCCTTTTTAAGAATGATAGTTATGGTTTTGCTTTTGAAATTG
AAATGGACTCATTAGTTATCAAGGTAGAGTGTTGCGGTTGGCAAGACTTC
TGTTGTTGTGCTTTCAAGATTAAATTAGAAGTATAGAGCAGTTATAAATA
TACCCTTTTTAAGTAATTTGATTTGCACTTTGTGCAGCCAACTTACCAAG
TTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCA
ATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTA
TCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCC
ATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAAC
ACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGT
GATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAATGAAG
GAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAG
CCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATT
CTTCTTTTGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTATG
TCCTTAACCTTCCCTTAC
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