CK934747

Overview
NameCK934747
Unique NameCK934747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:220..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934747 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.712e-28
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   62 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRXXXXXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 424
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+   +                            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGESSKIT-----------MPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK934747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.712e-2852.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004227_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934747 ID=CK934747; Name=CK934747; organism=Citrus sinensis; type=EST; length=838bp
GCGGGGGACTGAAGAAGAGGTTAAAGATTTAGNNNCTAGCAGCGAAATTG
TAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCT
CAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTT
AGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGA
GGTCTCCGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACG
CCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTT
TCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTG
ACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGT
GGGGAGACTAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGA
TGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGT
CTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTT
TTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTT
AAAATGCTGCTGACTAAAAGTAAATTAAAGACTGTGATGTTTTTATATCA
TATAATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGA
GATGAAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATT
TTGTAAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATAT
GTTTTATTATTAATAAATAAGTTGCTTCTCTGAATGTT
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