CK934780

Overview
NameCK934780
Unique NameCK934780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934780_ssr104 microsatellite CK934780_ssr104:104..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934780 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  161 IDTLKLGACVDVLGGLVHIGIGSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPGFQCPA 406
            ID LKLGACVDVLGGL+HIGIG SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+CP+
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
The following BLAST results are available for this feature:
BLAST of CK934780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC6.022e-1753.0136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004226_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934780 ID=CK934780; Name=CK934780; organism=Citrus sinensis; type=EST; length=536bp
TTATACCCCCAGCCCTACCCCACCATATGTACCATCACCACCGTATACCC
CAAGCCCTACCCCGCCATATGTACCATCACCACCGTATACCCCAAGCCCT
AGCCCACCACCACCACCAAGTGGAACACCGTGTCCTCCGCCGCCGCCACC
AACTTGTCCCATTGATACTCTCAAGCTTGGTGCATGCGTCGACGTGTTGG
GTGGTCTAGTACACATCGGTATAGGCAGCAGTGCAAAGGACGCTTGCTGC
CCCGTGCTGCAGGGGCTACTGGACTTGGATGCTGCATTATGTCTTTGCAC
CACCATTAAACTTAAGCTTTTGAATATCAATCTTATTATACCGATCGCCC
TTGAAGTGCTTATTGACTGCGGCAAGCATCCGCCGCCCGGATTCCAGTGT
CCTGCCTAATTGGTGACGCTTTCCAGCCATGCAATTGATGAATGCGACTT
GTTTGTTTTGGAGATTTTGTCAAAGATAATGACATGTAAGTGCATAAAGT
GGANGTACTTCATGATATCGAAGTTTGTCTTAATAT
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