CK934883

Overview
NameCK934883
Unique NameCK934883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934883_ssr138 microsatellite CK934883_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig436 contig Csv1_Contig436:26..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.538e-64
Identity = 141/288 (48.96%), Postives = 178/288 (61.81%), Query Frame = 3
Query:   60 MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV----KSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPN--SKPGIENAG--EMKSGDMFFIDPFIDLNDFDYPNSFQNH-HSAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDIDFCRSKL----XXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTG 881
            MG  L S+K ISGGW  AA+ CD CK+  AAVFCRVDSAFLC+ CD RIH+   +H RVW+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V     SS F  L  S     +     ++  G+    WL+PN  ++P     G   MK    F    F  L DF++PNSF +H ++AG DS+VPVQT T+P            L NN++CFDIDFCRSKL                  ++ GVVPDGN+ + ++ +   + +TG
Sbjct:    1 MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTTVDLTAVPVMADDLGL--CPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTG 275          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 125/296 (42.23%), Postives = 170/296 (57.43%), Query Frame = 3
Query:  108 VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD--SADSIVKSSAFNFLVP---SDQNGGSEFTGASEHDGVDSASW-LIPNSK------------------PGIENAGEMKSGDMFFI---DPFIDLN--DFDYPNSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL-----XXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGS 884
            +A+K CD+CK+A AA++CR D+AFLCL+CD ++H      ++HARVWMCEVCEQAPA VTCKADAAALCVTCD DIHSANPLARRHER+P+ PF+D  S+D  VK +A NFL     SD +G     G+ E +  ++ASW L+PN K                  PG  ++ EM +G  +     DP++DL+  + D        +S+G D VVPV+                   NENCF++DF                        ++VGVVPDG S++D+SY +G   ++G+
Sbjct:    1 MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDG----NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPG--DSPEMNTGQQYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTV----------NENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGA 280          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.436e-40
Identity = 99/223 (44.39%), Postives = 130/223 (58.30%), Query Frame = 3
Query:  111 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYP--NSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL 761
            +++ CD+CK+ AA +FCR D+AFLC +CD +IH      ++H RVW+CEVCEQAPA VTCKADAAALCVTCD DIHSANPL+RRHER+PI PF+D+       SS+ NF+   D++GG             +ASWL+  +K GIE        ++F        +D DYP        +S+G D VVPVQ                L  NE+ F+ D   SK+
Sbjct:    4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV-----------TASWLL--AKEGIEIT------NLF--------SDLDYPKIEVTSEENSSGNDGVVPVQN--------------KLFLNEDYFNFDLSASKI 182          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34
Identity = 83/201 (41.29%), Postives = 121/201 (60.20%), Query Frame = 3
Query:   93 SGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--DYPNSFQNH------HSAGMDSVVPVQ 662
            SG W   A+ CDTC++AA  V+C  DSA+LC  CD R+H      ++H RV +C+ CE APAA  CKADAA+LC  CD +IHSANPLARRH+R+PI P        + +++ + + PS+ +        ++ D  + ASWL+PN  PG +N G   +G +F ++ ++DL D+     N F+++       S G D VVP+Q
Sbjct:    9 SGTW---ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILP--------LSANSCSSMAPSETDAD------NDEDDREVASWLLPN--PG-KNIGNQNNGFLFGVE-YLDLVDYSSSMDNQFEDNQYTHYQRSFGGDGVVPLQ 188          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.097e-34
Identity = 82/200 (41.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  114 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--------DYPNSFQ-----NHHSAGMDSVVPVQ 662
            A+ CDTC++AA  V+CR DSA+LC +CD ++H      ++H RV +C+ CE+APAA  CKADAA+LC TCD++IHSANPLARRH+R+PI P  + S  S   + +    V   +N         + D  ++ASWL+PNS     N      G     D F++L D+        D  N +Q        S G D VVP+Q
Sbjct:    9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG-----DEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ 203          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.150e-32
Identity = 80/217 (36.87%), Postives = 117/217 (53.92%), Query Frame = 3
Query:   90 ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFLVPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFD------YPNSFQNHH--------SAGMDSVVPVQ 662
            I  G +  A+PCDTC++ A  V+C  DSA+LC++CD ++H+     ++H RV +CE CE+APAA  C+AD A+LC  CD+++HSANPLARRH+R+PI P     F S  +    S      P      DQ  G E     + D  + ASWL PNS     N    ++  + F D +++L D++      +   +  H         S G D VVP++
Sbjct:    9 IGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEE----GDKDAKEVASWLFPNSDKNNNN----QNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLK 217          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 3
Query:  120 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 380
            PCD C    A +FCR D+A LCL CD ++H       KH R  +C+ C   P +V C  D   LC  CD D+H +  ++  H R  +E F
Sbjct:    8 PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGF 97          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 3
Query:  123 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 380
            C+ C    A +FCR D+A LCL CD  +H+      KH R  +C+ C + P +V C  D   LC  CD D+H +   +  HER  +E F
Sbjct:   12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF 100          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.255e-12
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  123 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 380
            CD C ++ A V+C+ DSA LCL CD ++H       KH R  +C+ C ++P+++ C+ + + LC  CD   H+A+  +  H R P E F
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99          
BLAST of CK934883 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 41/132 (31.06%), Postives = 59/132 (44.70%), Query Frame = 3
Query:  123 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWM------------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGAS 473
            CD C    A+VFC  D A LC  CD ++H+     +KH R  +            C++C+   A + C+ D A LC  CD+ IH+AN   ++H+R  +     SA S V          S  N      G+S
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSS 136          
The following BLAST results are available for this feature:
BLAST of CK934883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COL5_ARATH2.538e-6448.96Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL4_ARATH1.000e-5242.23Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH7.436e-4044.39Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL2_ARATH1.229e-3441.29Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL1_ARATH6.097e-3441.00Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH1.150e-3236.87Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL15_ARATH3.478e-1338.89Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL14_ARATH5.933e-1338.20Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL13_ARATH2.255e-1237.08Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
STHX_ARATH1.119e-1131.06Probable salt tolerance-like protein At1g75540 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934883 ID=CK934883; Name=CK934883; organism=Citrus sinensis; type=EST; length=884bp
GGGACTCCGGAGACCAAAACTCAAAGAAAGNNNGAAAGAGGCTTTATTTA
GTAATGCCCATGGGAATTGAATTACATAGCGTGAAGGTTATTTCCGGCGG
GTGGAGCGTGGCGGCGAAGCCATGCGACACTTGCAAAGCGGCGGCGGCGG
CTGTTTTCTGCAGAGTTGACTCTGCTTTCCTATGCCTGAACTGCGATTTA
AGAATCCACAATTGCATGAACAAACACGCGCGTGTCTGGATGTGCGAGGT
CTGCGAGCAGGCCCCTGCGGCTGTCACGTGTAAGGCTGATGCGGCTGCCT
TGTGTGTCACGTGCGACAATGATATCCACTCTGCCAACCCTTTAGCCCGG
CGCCATGAACGCCTCCCTATTGAGCCGTTCTTCGACTCGGCTGACTCGAT
TGTCAAGTCGTCGGCTTTTAACTTCCTGGTTCCGAGTGATCAAAATGGCG
GCTCAGAGTTTACTGGCGCCAGTGAACACGACGGCGTGGACTCTGCTTCC
TGGCTGATTCCGAATTCGAAACCTGGAATTGAAAACGCGGGTGAAATGAA
ATCCGGGGATATGTTTTTCATCGATCCGTTTATTGATTTGAATGATTTTG
ATTATCCGAATTCATTTCAGAATCATCATAGCGCTGGCATGGACAGTGTT
GTGCCTGTTCAAACAACTAAACCGGAACCAATTCCAGCTCAAGCTGCAGC
TCCAATTCCTTTGATCAACAATGAAAATTGCTTCGATATCGATTTCTGTA
GATCCAAGCTCTCTTCATTCAACTACCAAAGCCAAAGTGTTTCATCGTCA
TCTCTTGATGTTGGAGTAGTTCCAGATGGGAACTCGATGTCCGATATTTC
GTACACATTTGGCCGAAATATGAGCACTGGGTCC
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