CK934895

Overview
NameCK934895
Unique NameCK934895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934895_ssr121 microsatellite CK934895_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934895_ssr133 microsatellite CK934895_ssr133:133..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.656e-75
Identity = 142/198 (71.72%), Postives = 156/198 (78.79%), Query Frame = 3
Query:  159 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSHM 752
            M+MQS+FDRLLFFEHARK+AE  YA++PLDADNLTRWGGALLELSQFQ V +SK+MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT  FQQA D +PSN+LY+KSLEV AKAPELHMEIH+HG  QQTM                      DLKYDIFGWVILAVGIVAWVGFAKS+M
Sbjct:    1 MEMQSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTM---AAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNM 195          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.563e-57
Identity = 106/198 (53.54%), Postives = 138/198 (69.70%), Query Frame = 3
Query:  159 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSHM 752
            MD +++FDR+L FE  R+ AE  Y  +PLDADNLTRWGG LLELSQF ++ D+K+MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG Q M                      D KYD  GWVILA+G+VAW+ FAK+++
Sbjct:    1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPM--GRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANV 196          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.370e-55
Identity = 103/197 (52.28%), Postives = 136/197 (69.04%), Query Frame = 3
Query:  171 SDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTM-----XXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 746
            +DF+RL+ FEHARK +EA Y  DPLD++NL +WGGALLELSQFQ +P++K M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+    G+GQQ +                           +  YD+ GW+ILA GIVAWVG AKS
Sbjct:    6 ADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKS 202          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.957e-50
Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 3
Query:  159 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSH 749
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG AKS+
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ----AASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSN 195          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.957e-50
Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 3
Query:  159 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSH 749
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG AKS+
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ-----AASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSN 194          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.861e-50
Identity = 103/196 (52.55%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  159 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 746
            MDMQ++ +RL+ FEHARK AEA Y K+PLDA+NLTRW GALLELSQFQT P  K+MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH                                   + KYD+FGWVILA  +VAW+ FA S
Sbjct:    1 MDMQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEP--KQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHT--------------GGTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANS 180          
BLAST of CK934895 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.088e-44
Identity = 97/193 (50.26%), Postives = 123/193 (63.73%), Query Frame = 3
Query:  180 DRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGL-----GQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAK 743
            D+L FFE  RK AE  Y  +P DADNL RWG ALLELSQFQ V DS KMI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD  +A+  F  A L+F  AV ++P N++Y KSLE+A KAP+LH   HK+ L     G +T+                      D KY + GWVILA+G+VA + F K
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETL--------AIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRK 186          
The following BLAST results are available for this feature:
BLAST of CK934895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU2.656e-7571.72Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO203_ARATH5.563e-5753.54Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO202_ARATH1.370e-5552.28Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TOM20_ORYSJ2.957e-5051.27Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSI2.957e-5051.27Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH3.861e-5052.55Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH1.088e-4450.26Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934895 ID=CK934895; Name=CK934895; organism=Citrus sinensis; type=EST; length=935bp
GGGGGCCTTCACTAAAGTCGCACCACTTTTGCACCGAGTTAGGGTTTCAG
CGAACTTTCAACACACACGCAGAGAGACTCTAGTCTCGTTCATCTGTCAG
TACAAAGCAATAAAGAGAGGGCGCGCGCGCGCGAGAGAGAGAGAGAGAGA
GACACGCCATGGACATGCAAAGCGACTTCGATAGATTGCTCTTCTTTGAA
CACGCTCGCAAAACCGCCGAAGCTGCCTACGCCAAGGACCCTCTCGATGC
CGATAATTTAACGAGGTGGGGCGGTGCTCTTCTGGAGTTGTCTCAGTTTC
AAACTGTTCCAGATTCAAAGAAGATGATTTTAGATGCAATTTCAAAGCTG
GAGGAGGCATTGATGGTTAGCCCCAATAGACACGACACATTGTGGTGTTT
GGGAAATGCTCATACTTCTCATGCTTTTTTGACTCCTGACCAGGATGAGG
CCAAGGAGTATTTCAACAAGGCAACTCTGTACTTTCAGCAAGCAGTTGAC
GAGGAACCCTCGAATGAGCTTTATCAGAAGTCTTTAGAGGTGGCTGCAAA
GGCTCCAGAATTGCACATGGAAATTCACAAGCATGGTTTAGGTCAACAAA
CAATGGGGGCATCTACTGGACCTTCTTCTACTTCTTCGGGTGCAAAGACT
TCAAAGAAGAAGAAAAGCAGTGATCTCAAATACGACATATTTGGATGGGT
AATCCTGGCTGTTGGCATTGTTGCATGGGTTGGATTTGCAAAATCCCATA
TGCCTCCCCCTCCCCCAACCCCTCCGATATAAGTGGGAGGAACATGGTTT
TGTTCGTGCCTCAGGCACTTTGAGATTTCAGTATCCACACAGTCCCNTTG
AGCCGTCTGATTCTAGGAGAATTGAGAATTTTTCGTGCTGTATGCCTGTA
CGGATCCTTTTAGTTATTATTTTAGTTATTTTCCC
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