CK934905

Overview
NameCK934905
Unique NameCK934905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934905 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.168e-69
Identity = 127/184 (69.02%), Postives = 152/184 (82.61%), Query Frame = 1 
Query:  232 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 783
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CK934905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH4.168e-6969.02Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934905 ID=CK934905; Name=CK934905; organism=Citrus sinensis; type=EST; length=848bp
GGGGAATTGATTTGAAGAAAACCCACAAGAGATTTTCGCATCACCACCGC
AGCGAGAGAAATGGAGAAGATAGCAGTAATGAGTGTCAGATCCATACGGC
AAGCAGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCAT
CTCCGCCACTTGTCGTCTTCTCGATCGCTCTTCAGTTTATCTTCACCTGC
TGCTTCGATTCCTTCCAAATCCATCCCTTTTGATTGCCGGTCTTCTCTTG
TGATGAGCATAGGATGCAACCGTTCTTTCAGTGAAGATGTTGCTCACATG
CCTGTAATAAGAGACCCTGAAATTCAGCGTGCTTTCAAGGACTTGATGGC
TGCAGACTGGGGTGAGCTTCCTGCTTCTGTCATCCATGATGCAAAGAGTG
CGTTGTCCAGAAATAATGATGACAAGGCTGGCCAGGAGGTCTTGAAAAAT
GTTTTCAGTGCTGCTGAAGCAGTTGAGGAATTCATTGGGATTATTATGAA
CATTAAAATGGAATTTGATGATGAAATTGGGCTAAGTGGTGAGAATGTAA
AACCCTTGTCAAATGAATTATCCTCTGCAATTCGTACAGTTTATCAACGT
TATGCTACCTACTTGGATGCATTTGGCCCTGATGAATCCTATCTGCGGAA
GAAGGTAGAAACAGAGTTGGGTTCAAAGATGATTTTCCTAAAGATGAGAT
GTGCCGGCCTTGGTTCTGAGTGGGGAAAGGTTACTGTTCTTGGAACCTCA
GGACTTGCGGGGTCATATGTTGAACAGAGAGCTTAGCCCATAGCTGAAAG
GTTTATTGTGATTATGGGTTTCTTTACANCTNGAACTTGCTTCTGAGT
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