CK934925

Overview
NameCK934925
Unique NameCK934925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8154 contig Csv1_Contig8154:297..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 4.025e-90
Identity = 158/177 (89.27%), Postives = 169/177 (95.48%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVA 533
            YGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVA
Sbjct:   76 YGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVA 252          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.921e-88
Identity = 155/176 (88.07%), Postives = 166/176 (94.32%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMV 530
            YGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV
Sbjct:   73 YGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV 248          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.649e-83
Identity = 149/176 (84.66%), Postives = 162/176 (92.05%), Query Frame = 3
Query:    6 GFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVA 533
            GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVA
Sbjct:   78 GFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVA 252          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 6.282e-51
Identity = 108/179 (60.34%), Postives = 129/179 (72.07%), Query Frame = 3
Query:    6 GFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVA 533
            GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+
Sbjct:   72 GFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVS 248          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.783e-21
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVA 533
            L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K   L++ EIK+ RLA++A
Sbjct:   81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLA 202          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.509e-20
Identity = 62/138 (44.93%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  129 DMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVA 533
            D    PL   T     +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG  FDPLG + DP K   L+L EIK+ RLAM+A
Sbjct:   65 DFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLA 201          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.147e-18
Identity = 61/152 (40.13%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVA 533
            L+ +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEIKHARLAM+A
Sbjct:   98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLA 241          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 67/209 (32.06%), Postives = 90/209 (43.06%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVA 533
            YGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK   L++AEIKHARLAM+A
Sbjct:   79 YGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLA 236          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVA 533
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFFDPL LA          D EK   L+LAEIKH+RLAM+A
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLA 236          
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 64/188 (34.04%), Postives = 89/188 (47.34%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVA 533
            YG+DPFGLGK  E           N AK                                ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A
Sbjct:   93 YGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFA 235          
The following BLAST results are available for this feature:
BLAST of CK934925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB4A_ARATH4.025e-9089.27Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH4.921e-8888.07Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.649e-8384.66Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE6.282e-5160.34Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.783e-2146.34Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.509e-2044.93Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4_SPIOL3.147e-1840.13Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC2.664e-1732.06Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC6.562e-1637.50Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB26_ARATH6.562e-1634.04Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934925 ID=CK934925; Name=CK934925; organism=Citrus sinensis; type=EST; length=534bp
ACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTC
AGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGA
GTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTG
AAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTG
ATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTC
AGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATC
CTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCA
GAGATCAAGCACGCCCGCCTTGCCATGGTTGCAT
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