CK934930

Overview
NameCK934930
Unique NameCK934930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:137..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934930 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 2
Query:   68 MNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 571
            MNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:    4 MNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CK934930 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.603e-40
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = 2
Query:  320 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 571
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CK934930 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.269e-39
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 2
Query:  320 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 571
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CK934930 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  317 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 553
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CK934930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH5.744e-5263.95Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE8.603e-4085.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU3.269e-3985.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.992e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_A04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934930 ID=CK934930; Name=CK934930; organism=Citrus sinensis; type=EST; length=817bp
GGGAAACTTTGTAAAACAAAAAAAAAAAAAAANNNAAATTTGCGCTGCAG
CAGGAGCCATGGCAGCCATGAACTCTAGTGTACTCGCATGCAACTATGCC
ATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGTTTCAGT
TTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAGCTCAAC
AAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCC
ATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTC
TTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAGCAAAG
CCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTGCAAAC
TTTGCCAGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAA
CTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTCATCT
CGGATGATTTGGAATTGGAGTGCAAAGGGAAAGATAAATACAAGTGTGGT
TCCAATGTTTTCTGGAAATGGTGAAGTGGGACAACTGATCTCTTTAAACA
TTTTATTTTACCCTCCCATGTATCTAAGTTTCCATTGAAGAACCTTTACT
TGTGCTTATTTGTGTGTTATATTTTTCTGCTCAGTATATTTTTATATCCT
CATCATGTTTTTGCCTTTTTGGAAGAAAATTGGGGTTAGTTATGTAAGCA
AGAGCTAAATGGCTACACTTGTCACCTAGTTTCAATGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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